Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0313 ATGAGTCGGGGTATTCCTGAACCAAAACTAACAGCTGTAGATGCCATGATTGACAAGTTGACTGGAGCAATATTTGTTTTTCAAATAGTGGTTGTCATTGTTCTGGGCATAGCTGGGAATGTCTGGAAGGATACAGAAGCAGTAAAGCAATGGTATGTTCTATACCCAAAGAAAGGTCCATGGTATGAGCTATTGGTCATTCCTCTACGGTTTGAGCTTCTTTGTTCAATTATGATCCCCATATCTATAAAGGTATCTTTGGATCTTGTGAAGAGCTTATATGCAAAGTTTATTGATTGGGATAACCAGATGATTGACCAAGAAACAAGTACTCCATCCCATGCAACAAATACGGCAATAAGTGAGGACTTGGGGCAGGTTGAGTATATTTTGACTGATAAAACTGGAACTCTTACTGAGAATATAATGATCTTTAGAAGATGCTGTATTGGTGGCATTTTCTATGGAAATGAGAGTGGGGATGCTCTGAAAGATGTGGAGCTGCTGAATGCTGTTTCCAGTGGCTCTCCTGATGTTATTCAATTTCTTACAGTTATGGCATTATGTAATACAGTTATACCTGTGAAAAGCAAAACTGGAGCAATCTCATACAAGGCACAATCTCAAGATGAGGATGCTCTTGTTCAGGCTGCTGCTCGCTTGCACATGGTTTTTGTCAATAAGAATGCAAATACTCTTGAAATCAACTTCAACGCTTCAATAATTCAGTATGAAGTATTGGACACTCTGGAGTTCACTTCTGATAGGAAAAGGATGTCAGTTGTGGTGAAAGATTGCCAGAATGGAAAGATTTTCCTTTTGTCAAAAGGAGCAGATGAAGCCATTATACCTTATGCATGTGCTGGACAACAAACACGAACTTTTACTGAAGCTGTAGAACAATATTCTCAATTGGGACTACGCACGTTATGCTTGGCTTGGCGGGAGCTTAAAGAAGATGAATATCGAGATTGGTCTTTGATGTTTAAAGAGGCTAATAGCACATTGGTTGATAGGGAGTGGAGACTAGCTGAGGTCTGCCAAAGACTAGAACATGACCTTGAAATCCTTGGTGTTACAGCAATAGAGGATCGTCTACAGGATGGTGTACCAGAAACAATTGAGACACTTCGAAAAGCAGGAATCAACTTTTGGATGCTTACCGGAGACAAGCAGAATACTGCCATACAGATTGCTCTTTCCTGCAATTTTATTTCCCCTGAACCAAAAGGCCAGCTTTTGTTAATCAATGGCAAAACAGAAGATGAAGTTGGCAGAAGTTTAGACAGGGTCTTGCTTACAATGAGGATAACAACTTCAGAACCTAAGGATGTGGCATTTGTTATTGATGGATGGGCTCTTGAAATTGCGCTTAAGCATTATCGGAAAGCATTCACTGACTTAGCTATATTGTCAAGGACGGCTTTATGTTGTCGTGTGACACCATCTCAAAAAGCACAGCTTGTGGAGATCTTAAAATCATGCGATTATAGAACATTGGCTATTGGGGATGGTGGAAATGATGTGAGGATGATACAACAAGCTGACATTGGTGTCGGCATTAGTGGGAGAGAAGGATTGCAGGCAGCAAGGGCTGCTGATTATAGTATTGGGAGTAAGTTATACCAGATACTGCTATGTTAA 1644 0.4045 MSRGIPEPKLTAVDAMIDKLTGAIFVFQIVVVIVLGIAGNVWKDTEAVKQWYVLYPKKGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDNQMIDQETSTPSHATNTAISEDLGQVEYILTDKTGTLTENIMIFRRCCIGGIFYGNESGDALKDVELLNAVSSGSPDVIQFLTVMALCNTVIPVKSKTGAISYKAQSQDEDALVQAAARLHMVFVNKNANTLEINFNASIIQYEVLDTLEFTSDRKRMSVVVKDCQNGKIFLLSKGADEAIIPYACAGQQTRTFTEAVEQYSQLGLRTLCLAWRELKEDEYRDWSLMFKEANSTLVDREWRLAEVCQRLEHDLEILGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLLINGKTEDEVGRSLDRVLLTMRITTSEPKDVAFVIDGWALEIALKHYRKAFTDLAILSRTALCCRVTPSQKAQLVEILKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGSKLYQILLC* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0313 547 Pfam Cation transport ATPase (P-type) 188 284 - -
Vvi12g0313 547 SFLD C1.7: P-type atpase like 114 540 - -
Vvi12g0313 547 Pfam haloacid dehalogenase-like hydrolase 487 521 - -
Vvi12g0313 547 SUPERFAMILY HAD-like 120 537 IPR036412 -
Vvi12g0313 547 ProSitePatterns E1-E2 ATPases phosphorylation site. 133 139 IPR018303 -
Vvi12g0313 547 Gene3D - 354 541 IPR023214 -
Vvi12g0313 547 FunFam Phospholipid-transporting ATPase 201 344 - -
Vvi12g0313 547 NCBIfam HAD-IC family P-type ATPase 352 412 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi12g0313 547 NCBIfam HAD-IC family P-type ATPase 469 539 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi12g0313 547 SFLD p-type atpase 114 540 IPR044492 -
Vvi12g0313 547 FunFam Phospholipid-transporting ATPase 354 540 - -
Vvi12g0313 547 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 138 325 IPR023299 GO:0000166
Vvi12g0313 547 Gene3D - 184 341 IPR023299 GO:0000166
Vvi12g0313 547 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 3 538 - -
Vvi12g0313 547 PRINTS P-type cation-transporting ATPase superfamily signature 380 390 - -
Vvi12g0313 547 PRINTS P-type cation-transporting ATPase superfamily signature 502 521 - -
Vvi12g0313 547 PRINTS P-type cation-transporting ATPase superfamily signature 131 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0313 Vvi-Chr12 4040107 4065010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0313 1 538 Primary Pumps ATPases AT5G44240 86.803 0.0 964
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0313 K01530 - vvi:100252404 1052.74