Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0312 ATGAACCAGTACTTTTTGTTAATTGCTTGCCTTCAACTATGGCCTCTTATTACACCGGTAAATCCTGCCAGTACATGGGGTCCCCTTATTTTCATATTTGCAGTCTCTGCAACAAAAGAGGCATGGGATGATTACAATAGATATCTCTCTGATAAAAAGGCAAATGAGAAAGAAGTTTGGGTTGTAAGGCAGGGCATCAAGAAACATATTCAAGCACAGGATATTTGTGTTGGTAATGTAGTCTGGCTTCGTGAGAATGAAGAAGTGCCATGTGATCTTGTTTTAATTGGCACCTCTGATCCACAAGGTGTTTGCTATGTGGAGACAGCTGCCCTAGATGGTGAAACTGATCTTAAGACGAGGGTTATACCCTCTGCTTGCATGGGCATAGATTTTGAGCTATTGCACAAAATGAAGGGTGTTATTGAGTGTCCCATTCCAGATAAGGACATTAGAAGATTTGATGCAAATCTGCGTTTGTTCCCTCCGTTCATCGATAATGATTTTTGTCCTTTAACCATAAAAAACACAATTCTTCAGTCGTGCTACTTGCGGAATACAGAGTGGGTTTGTGGGGTTGCTGTTTATACAGGCAAGTTCTCTTTTAATAAAAGAACGGGAGGTGGCAAGATTCTATTGTGGAGGTAA 648 0.4074 MNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSATKEAWDDYNRYLSDKKANEKEVWVVRQGIKKHIQAQDICVGNVVWLRENEEVPCDLVLIGTSDPQGVCYVETAALDGETDLKTRVIPSACMGIDFELLHKMKGVIECPIPDKDIRRFDANLRLFPPFIDNDFCPLTIKNTILQSCYLRNTEWVCGVAVYTGKFSFNKRTGGGKILLWR* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0312 215 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 199 - -
Vvi12g0312 215 FunFam Phospholipid-transporting ATPase 31 204 - -
Vvi12g0312 215 SUPERFAMILY Calcium ATPase, transduction domain A 56 203 IPR008250 -
Vvi12g0312 215 Gene3D - 35 207 - -
Vvi12g0312 215 Pfam E1-E2 ATPase 55 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0312 Vvi-Chr12 4015839 4021634 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0312 1 198 Primary Pumps ATPases AT5G44240 90.909 9.31e-131 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0312 K01530 - vvi:100252404 419.083