Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0311 ATGGCTCTCAAGGAGAAAGTGAAGGAAGGAGTTAAGGCCAAAGAGCCGCATTTCCGGGGAGTGAGGAAGAGGCCATGGGGTCGCTACGCCGCCGAGATTAGGGATCCCACCAAGAAGAGCCGTGTCTGGCTGGGAACCTTCGACACGGCGGAGGAGGCCGCCCAAGCCTACGACGCCGCCGCCCGGGAGTTCCGGGGCTCCAAGGCCAAAACCAACTTCCCTCTCCCCAACGAAGTCCTCCCCTTCCCCAACACCGACAACCTCACCCGCAGCCCCAGCCCCAGCAGCACCGTCGAGTCCTCCAGCCCCCACGCGCCTCTCGAGCTCGACCTCACGCGCCGCCTAGGAAGCAGCGACGGTGGCTTTCCGTTCCATTACCAGCCGCACGTTGTGAATTCCGCTGCTGTGGCAGGCGTTTGGCCTCACGCGCGGCCAGTTTTGTTTTTGGATGCGTTTGTCGGGGCGGAGGGGTTCCGAGTCAACCCGGTTACAGTCGCCTACGATGGCGGGTTTGGGAGCCCGGTTCAGAGCGAGTCGGACTCGTCTTCTGTGGTGGACTCGGTCCAGCATGAGAGCAGTGGGGCAACGAGGGTTCTGGGTCTGGATCTTAACTTCCCTCCACCCCTGGAGGCTTGA 636 0.6289 MALKEKVKEGVKAKEPHFRGVRKRPWGRYAAEIRDPTKKSRVWLGTFDTAEEAAQAYDAAAREFRGSKAKTNFPLPNEVLPFPNTDNLTRSPSPSSTVESSSPHAPLELDLTRRLGSSDGGFPFHYQPHVVNSAAVAGVWPHARPVLFLDAFVGAEGFRVNPVTVAYDGGFGSPVQSESDSSSVVDSVQHESSGATRVLGLDLNFPPPLEA* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0311 211 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Vvi12g0311 211 FunFam Ethylene-responsive transcription factor 2 17 75 - -
Vvi12g0311 211 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Vvi12g0311 211 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Vvi12g0311 211 MobiDBLite consensus disorder prediction 75 105 - -
Vvi12g0311 211 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 189 - -
Vvi12g0311 211 MobiDBLite consensus disorder prediction 82 103 - -
Vvi12g0311 211 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Vvi12g0311 211 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Vvi12g0311 211 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Vvi12g0311 211 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Vvi12g0311 211 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0311 Vvi-Chr12 4004275 4004910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0311 14 209 AP2-EREBP Transcription Factor Family AT5G44210 47.030 1.58e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi12g0311 AP2 2.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0311 K09286 - vvi:100242144 381.333