Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0307 ATGGTAGTGAAAGTTTCAGATGATAGTGGTGAAGCTATCCTTTCTCTGTTCAATGAACAAGCAGAGAGAATATTTGGGTGCTCTGCTGATGAGCTTGATAAGCTGAAACCACAGGAGGGAGAGGAAAAACGATTCCAACATAAAATGAAGGACGCTATTTGGGTCCCTAATCTTTTCCAGATTATTGTTGCACAGCATGAATACAAGAATGAGAAAAGGCAATGGATCACAGCCAGGGCTGTTGTGCAAGATGATTTTGAAGCTGAATCCAGATTCTTGTTGGACGAGATATCAAAGATGAAGACATCACAATAG 315 0.4063 MVVKVSDDSGEAILSLFNEQAERIFGCSADELDKLKPQEGEEKRFQHKMKDAIWVPNLFQIIVAQHEYKNEKRQWITARAVVQDDFEAESRFLLDEISKMKTSQ* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0307 104 FunFam - 1 102 - -
Vvi12g0307 104 CDD RPA1_DBD_C 1 99 IPR047192 -
Vvi12g0307 104 Gene3D - 1 102 IPR012340 -
Vvi12g0307 104 Pfam Replication factor-A C terminal domain 1 93 IPR013955 -
Vvi12g0307 104 SUPERFAMILY Nucleic acid-binding proteins 2 100 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0307 Vvi-Chr12 3974003 3974514 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0307 1 104 Core DNA Replication Machinery Family AT5G08020 57.692 1.98e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0307 K07466 - vri:117933368 175.637