Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0300 ATGGCTTTGCTGTTCAAGGATCCAAGCAAGCTTTCAGCTTACCGGGACAAAAGATTTCCTGGAACACAAGAAGATTTTGAGCATGCTCTCTTGACTTCAATGACTGTCTACATTGGAAACATGTCCTTTTATACAACAGAAGAGCAAGTTTATGAACTGTTCTCCCGGGCTGGGGAAATTAAAAAGATAATCATGGGTTTAGATAAGAACTCAAAAACTCCTTGTGGCTTTTGTTTTGTCTTATACTACTCTAGAGATGATGCTGAAGATGCCGTCAAATATATAAGTGGAACAGTTCTTGATGATCGCCCCATTCGTGTGGATTTTGATTGGGGATTCCAAGAAGGTAGGCAATGGGGTCGTGGTCGAAGTGGTGGACAGGTGCGGGATGAATATCGTACTGACTATGATCCTGGTAGAGGTGGTTATGGAAAATTGGTTCAGAGAGAATTGGAAGCCCAAAGGCAACTTGTAGATTATGGTTCTGGGTCATTGGGATCTTTCCCACCAGTTATGCCATCTCAATACGGTAGACACGGCGGAAGCCAGGGTCATGGGGGTTCTAATCGCCACAGTAGAGATTACCCCCGGAAGCGACACCGAGATGATGACCGTCATTCACATGACTTCTCCAAGAGAACCTCGGATCATGACTCTCGAAGAAACTCTGATCATGACTCCAGACCAGAGAAGAATCCACGATTCCGTGAGAGTGGCGATTCTGATGATGAGGAGGAAGATGATCGAAAACGACGGCCTTAG 762 0.4528 MALLFKDPSKLSAYRDKRFPGTQEDFEHALLTSMTVYIGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSRDDAEDAVKYISGTVLDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQRELEAQRQLVDYGSGSLGSFPPVMPSQYGRHGGSQGHGGSNRHSRDYPRKRHRDDDRHSHDFSKRTSDHDSRRNSDHDSRPEKNPRFRESGDSDDEEEDDRKRRP* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0300 253 MobiDBLite consensus disorder prediction 124 138 - -
Vvi12g0300 253 MobiDBLite consensus disorder prediction 196 253 - -
Vvi12g0300 253 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 251 IPR027157 GO:0000339|GO:0005846|GO:0045292
Vvi12g0300 253 SMART rrm1_1 35 108 IPR000504 GO:0003723
Vvi12g0300 253 CDD RRM_NCBP2 36 113 IPR034148 -
Vvi12g0300 253 Gene3D - 5 150 IPR012677 -
Vvi12g0300 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Vvi12g0300 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Vvi12g0300 253 MobiDBLite consensus disorder prediction 119 143 - -
Vvi12g0300 253 MobiDBLite consensus disorder prediction 162 253 - -
Vvi12g0300 253 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
Vvi12g0300 253 SUPERFAMILY RNA-binding domain, RBD 26 144 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0300 Vvi-Chr12 3932559 3943855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0300 35 109 Eukaryotic Initiation Factors Gene Family AT2G23350 26.667 4.41e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0300 K12883 - vvi:100265980 433.721