Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0295 ATGCTTGCTGTGTCGCCTTTGAGGAGCACCAACGATGAGAGAGAGGGAGAGATGGAGAGTTTCTCGATCGGAGCCGATGACTTCCCGGACTTCTATGAAGGGAACTTGCTCGAATGTATCGATTTCGACGATCTTTTCATCGGCATACACGACGGAGAGATATTGCCGGACTTGGAGATGGACCCAGAAATTCTCGCTGAATTTTCCGTTAGCGCCGGAGAAGAATCCGACGTCAACACATCGGTAACCGAGAAAAAGGTAGAGGATAATCCAAAGAAAGAGGAGGAAGACAAAGTTTCAGATACGGGGTCGGGTTCTGGGTTGGGGTACGGGTCGAGCTCGAGTCGAGGAGAAGAGATTGTGAGCAAGAGAAGTGAATCTGTTGCAACAAACGCATCTCCGAAAGAAGTTGAAAAAGGCCGAAAATCATCAGCACAATCAAAGAATCCTCAAGGGAAGAGAAAAGTGAAGGTGGATTGGACCCCAGAGCTGCATAGGAGGTTTGTGCAGGCAGTGGAGCAGCTAGGTGTGGATAAAGCAGTGCCTTCAAGGATTTTAGAGATTATGGGAATCGATTGTCTCACTCGCCACAACATTGCTAGCCACCTTCAAAAATATCGGTCCCATAGGAAGCATTTGCTGGCTCGGGAAGCTGAGGCGGCGAGCTGGAGCCAGAAACGGCAAATGTATGGAGTAGCAGCCGGAGGAGGAGGACACAAGAGAGAGATGGGAGGTTGGATTCCACCTACCATGGGCTTCCCTCATATAACACCAATGCACCACCACCCCTTCAGACCTTTACATGTTTGGGGTCATCCCACAGTTGACCAGTCAGCAATGCATATGTGGCCTAAACATCTCCCCCATTCACCATCTCCACCGCCGCCGCCACCACCTACATGGCCACCATCTGCTACACCTCCTTCACCTTCACCGGACCCTTATTGGCATCCTCACCACCAACGCGTTCCAAATGGACTAACCCAAGGGACACCTTGCTTTCCACAACCTCTGGCAGCGGCGAGGTTTGCAACTCCACCTGTCACAGGCATCCCACCCCATCCCATGTACAAAGTAGATCATAATCATCCAGGCATTGGCGTCCCGGCTCGACATTCGGGCCCCTTTCCTCTCTTCGATTTTCATCCCTCCAAAGAGACCATAGATGCAGCCATTGGAGATGCTTTATCAAAGCCATGGCAGCCTCTTCCTCTTGGCCTAAAACCTCCTTCTCTTGATGGTGTGATGGTGGAACTGCAGCGTCAAGGGGTTCCCAAAATACCACCTACTTGTGCTTGA 1299 0.5112 MLAVSPLRSTNDEREGEMESFSIGADDFPDFYEGNLLECIDFDDLFIGIHDGEILPDLEMDPEILAEFSVSAGEESDVNTSVTEKKVEDNPKKEEEDKVSDTGSGSGLGYGSSSSRGEEIVSKRSESVATNASPKEVEKGRKSSAQSKNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQKRQMYGVAAGGGGHKREMGGWIPPTMGFPHITPMHHHPFRPLHVWGHPTVDQSAMHMWPKHLPHSPSPPPPPPPTWPPSATPPSPSPDPYWHPHHQRVPNGLTQGTPCFPQPLAAARFATPPVTGIPPHPMYKVDHNHPGIGVPARHSGPFPLFDFHPSKETIDAAIGDALSKPWQPLPLGLKPPSLDGVMVELQRQGVPKIPPTCA* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0295 432 NCBIfam myb-like DNA-binding domain, SHAQKYF class 155 209 IPR006447 GO:0003677
Vvi12g0295 432 Pfam Myb-like DNA-binding domain 158 207 IPR001005 -
Vvi12g0295 432 Gene3D - 152 213 - -
Vvi12g0295 432 SUPERFAMILY Homeodomain-like 153 212 IPR009057 -
Vvi12g0295 432 FunFam Two-component response regulator 151 214 - -
Vvi12g0295 432 MobiDBLite consensus disorder prediction 283 335 - -
Vvi12g0295 432 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 431 IPR044825 GO:0003700|GO:0045893
Vvi12g0295 432 MobiDBLite consensus disorder prediction 287 317 - -
Vvi12g0295 432 MobiDBLite consensus disorder prediction 79 101 - -
Vvi12g0295 432 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 211 IPR017930 -
Vvi12g0295 432 MobiDBLite consensus disorder prediction 1 25 - -
Vvi12g0295 432 MobiDBLite consensus disorder prediction 70 159 - -
Vvi12g0295 432 MobiDBLite consensus disorder prediction 105 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0295 Vvi-Chr12 3879596 3882318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0295 1 383 G2-like Transcription Factor Family AT5G44190 40.404 2.34e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi12g0295 Myb_DNA-binding 5.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0295 - - vvi:100260852 835.869