Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0294 ATGGAGGGTGGTGCGGAAGAGGAGAAGAAGAAGGCTCCAGAAGGAGAGAACAAGTCGAAGCGGAAGATGAAGACTGCTTCGCAGTTAGAGATTCTGGAGAAGACTTATGCTGTGGAGACGTATCCATCGGAGACCTTGAGAGCAGAGCTTTCTGCGAAATTAGGTCTTTCTGATCGGCAATTACAGATGTGGTTCTGTCACCGGAGGTTGAAAGATAGGAAGACACCTCCGGTGAAGAGACCACGAAAGGATTCTCCTGTGAAGGTGACATCTTCTGCAGCCGGAACTCCGGTTCGGGAAGAAATGGAAGTGGGCAATGAGCATCCCTCAGGGTCGGGTTCGGGGTCAAGCCCATTTGGTCATGTATTGGAGTCACGAAGAGTTGTCCCTCGGCCTGGAACTGCTGTTGCAAGGATTGGAGCTGATATGCCGCCAATGAAGAGGTACTATGAGCCACCTCAGCCCATATCAGAGCTTCGCGCCATAGCATTTGTGGAGGCACAGTTAGGGGAGCCATTGAGGGAGGATGGGCCAATTCTCGGAATGGAGTTTGATCCCTTGCCACCGGACGCATTTGGCGCTCCCATTGCGACAGTTGGGCAGCAGAAGCAAGGTGTGCGGCCTTATGAGACCAAACTTTACGAGCGACCTGACGCTAAACCAATCAAGGGTGCTGGAAGGGCTGTTCATGAATATCAATTTCTTCCGGAGCAGCCAAGTGTCAGAACTGACACATATGAAAGGGTTGGTTCTCACTACTATGGTTCACCTGCTGATGGTCCAAGTGCCAGGGCTTCATTGTCCACTGGACGCTCATTCATGCATGGGAATGAACAGGTAGCCTCTGGATATGGTTTTCAAGGGCAGATGCCAAACTTAAATCTTCTTTCCCAACAGGGTAGGCAGAACCATGGCTTGTCATCCACTTCGGGAGATTATGACACTGTTCCACGAAAGAATTCCCTTGGAAGCATTGGTATGGATGCTCATTTTGGTTCTCATCCAATTACTGCGCTGGACAATCCATTTATATCATCTGATCGGAGGGTTACCAATGATGAGGATGTTTTGCGGATGGAGAGGAAACGCAAGAGTGAAGAGGCAAGGATAGCAAAGGAAGTTGAAGCTCATGAAAAAAGAATTCGAAAAGAGCTTGAGAAACAAGATATTTTGAGGCGAAAGAGAGAAGAACAAATGAGGAAAGAAATGGAGAGGCATGACCGTGAAAGGCGGAAGGAAGAAGAAAGGCTTTTGCGTGAAAAGCAGAGAGAAGAGGAGAGATACCAGAGGGAACAAAGGCGTGAACTTGAACGGAGGGAGAAGTTTTTGCAAAAGGAATCTATCAGAGCTGAGAAAATGAGACAAAAAGAAGAACTCCGCAGGGAAAAGGAGGCTGCAAGGGTTAAAGCTGCTAATGACCGAGCTATTGCTCGAAGAATTGCTAAAGAATCAATGGAATTAATTGAGGATGAACGATTGGAACTCATGGAATTGGTGGCTTTAAGCAAGGGGTTGCCTTCAATACTGTCTCTTGACAGTGAAACTCTTCAAAATCTTGAGTCATTTAGGGATATGTTGACTGCATTCCCACCCAAGTCTGTGCAATTGAGAAGGCCTTTCACAATTCAACCCTGGACTGATTCTGAGGAGAATATAGGAAATCTTCTTATGGTTTGGAGATTTTTAATTACCTTTTCTGACGTTCTTGGGCTTTGGCCATTTACTATGGATGAGTTTGTTCAAGCTTTTCATGACTATGATCCAAGGTTGTTGGGCGAGATACATGTTGCTCTCCTGAGATCCATCATTAAGGATATTGAAGATGTTGCCCGAACACCCTCCATTGGGCTGGGCGCAAATCAAAATAGTGCTGCTAATCCTGGGGGTGGGCATCCTCAGATTGTTGAAGGGGCATATGCTTGGGGCTTTGATATTCGCAGCTGGCAGCGACACTTAAACCCATTGACATGGCCTGAAATATTGCGGCAGTTTGCCTTATCTGCAGGGTTCGGGCCAAAGCTGAAGAAAAGGAATGTGGAAGAGACATATCTCCGAGATGACAATGAGGGAAATGATTGTGAAGATATTATTACTAATTTGCGCAGTGGAGCAGCAGCAGAAAATGCTGTTGCGATAATGCAAGAAAGGGGTTTCTCTAATCCACGTAGATCTAGGCATCGCTTGACTCCTGGGACGGTCAAATTTGCAGCATTTCATGTTCTTTCTCTTGAGGGAAGCAAGGGCCTAACAATATTAGAAGTTGCTGACAAGATCCAGAAATCTGGACTTCGGGACCTTACAACAAGCAAGACACCAGAGGCATCTATTGCTGCTGCCCTGTCAAGGGATGGAAAGCTTTTTGAAAGGACTGCACCATCAACATATTGTGTACGCCCGGCATATAGGAAGGACCCCGCTGATGCTGATGCAATACTTTCTGCAGCCAGGGAAAAAATCCAGATCTTTAAAAGTGGGTGTTCCGATGGAGAAGAGGCTGATGATGTAGAAAGAGATGAAGATTCCGAAAGTGATGTAGTTGAGGATCCTGAGGTTGATGATTTAGGTGCTGATCCAAATTTGAAGAAAGAGGCTCAAAATTCTTATGAAGCAGATGGATTTCAAAGCAAGTCTGTCTCAGAAAATGAAAAGGAGACTCTCTTTGCTGAGGCTATGGAAACAAAAGGTGGCCTTGAGAATGCTGGTGAGGGTTTGTCTTCAACACATTCTGAGGGTTTCAAGGAGGTAATAAGTACTGGTGCTTCTGCTGATCAATCCATCGATGTTGCTGGCATAAGCAATAAGCCAACTAATCCTGATCAAGAAGACACTGATATTGATGAAAGTAACTCTGGGGAACCATGGGTTCAAGGACTTATGGAAGGCGAGTATTCTGATCTGAGTGTTGAGGAGCGCCTTAATGCCCTTGTAGCTTTAATTGGTGTGGCAATTGAAGGAAACTCAATTCGCATTGTTCTCGAGGAACGTTTGGAAGCGGCAAATGCTCTGAAGAAGCAAATGTGGGCAGAGGCTCAACTTGATAAACGGCGCATGAAAGAAGAGTATGTCATGAAGATGCATTACCCGTCTTTTATGGGCAATAAGACTGAACAGAATGTTACAATGTCCACGACAGAGGGCAGGCAAAGTCCAATGGTAGCTGTTGATGAAAAAAATAATGAGCTGTCAATGAACCCTGTAGTCCATCCCGAACCTTTTAGTGATCCACAGAACGACCAAAGTTTTCTTAATAATTTGCCCCCTGAGAGGAACCTGCCAATGCAAGATTTCTCTGCTGGGCCAGAAAATATCCCACTTCAGCTACCTGGATATGCTGCAGAAAAGTCACGCTCACAGTTAAAATCTTATATTGGCCACAAGGCAGAAGAGATGTATGTATATAGGTCATTGCCTCTTGGTCAGGACCGTAGGCGAAATCGATATTGGCAGTTTATTACCTCTGCTTCTAGAAATGATCCTAACTCTGGCCGGATCTTCGTTGAGTTACGGAATGGTTGTTGGAGGCTTATTGACTCCGAGGAGGGGTTTGATGCTCTTGTGGCATCTTTGGACGCAAGAGGGGTTAGGGAAGCCCATTTGCAATCAATGCTGCAAAGGATTGAAATATCCTTCAAGGAAACAGTTAGGAGGAACTTGCAGCTTTCAAGCATTGGAAGGCAAAGTGGAGGTGCTGTAAAAACAGAAGATTCTGAAATGGCTCGCCCCACTGGTTGCAGTGTTGATATAGATAGCCCTAGTAGCACTGTGTGTGTTTCAAATTCTGATGCAACGGAGCCCTCAGCATCGTTTTCAATTGAGCTTGGAAGGAATGATGCTGAGAAATTTGATGCATTGAATAGATATCAAGATTTTGAGAAGTGGATGTGGAAAGAATGCATTAATCCTTCAACACTATGTGCCCTGAAGTATGGGAAGAAAAGGTGCACACAACTTTTGGGAATTTGTGATCACTGCCATGATTTACACTTTTTTGAAGACAACCACTGTCCTTCTTGCCATAGGACCTATAGCCCTTTGGACAGCAACTATTCTGAACATGTGGCTCAATGTGAAGAAAAGCACAAAGTAGACCTTGAATGGGGCTTTTCATCGAGTTCAGACTCTTCTCCCCTGAGGATCAAATTACTCAAAGCCCATTTAGCTCTAATTGAGGTCTCTGTTCTACCTGAAGCTCTTCAACCTGACTGGACAGACACCTACAGGAAGTCTTGGGGTATGAAGCTGCATGCCTCTTCATCAGCTGAAGACCTTATTCAGATTCTGACATTGTTGGAGAGTAACATAAGGAGGGACTACTTATCCTCAGACTTTGAGACCACCAATGAACTGTTGGGTTTGTCTAATGCATCAGGATGTGCTGTTGATGATTCTTTGGCAGCTGGATCAGTTCCTGTACTTCCATGGATACCACAAACAACAGCTGCTGTGGCAATAAGGCTCATTGAACTTGATGCATCCATTTCTTACATGCTTCATCAGAAGTTGGAATCTCACAAAGATAAAGGGGCTAATGACTTCATAAGAGTTCCGGCTAAATTTTCTGTTATGAAGAACATGCAAGATGATGAATCTGCAGAAGCTCCGATTGAAGCTGTACATCTTCGAGATGAGAATTGGGTTGAAATGGGAAGCGGGCATACCAGCTCAGGCCGTGGGCGAGGGGGTCGACGAGGTCGTGGTCGCACTCGTGGGGGGAGATCTCAGAGAAGGGTCATTGGTTCCAGATCTGAATCGAGCAAAAGAAGTAGTGCAGCAAACAATGAAAAACTAGGGCTACTGGGATGGAAAGGCCGAACACGGGGACGAGGAGGGCGTAGGAGGGGTCGGCGCACTGTCAGAAGTAGGCAGAAACCTGTGAAACAGGTGGTTGAAGACATCCCTGAAGAGATCATATTCAAGCCACCCCCAAGAAACTTGGATAGGGAGTGGAATGTAGAAACCCCCACGAGGGAGCCAGTGGAGGAAGCTGAAAATGTTAGCAGTTCGGAAAGTTCAGAGGAGTATGACGATGATAACGGTCAGGGAACAGGTGATGAATGTGATGATTTAGGCGTAGATGAGTATTCGGGGCCTTTTAATGGCAAGTCAGAAGATGTAATAGAGGAGAGTGATGAGATAGGAGATGGTGATGAAGATGAAGAGGAGGAGGGAGAGGAGGAGGAAGATGATGAGGGAGACGTAGATGTGGGAGGATATATAATTGGGGATTCGGATGAAGAGAGAAACGGTTATGAAGATGGAGGGCATACTGGGGTAGGAGATGAAGGTGGAGGATATGCATCTTCAGATTACAGTGAGTAG 5319 0.4574 MEGGAEEEKKKAPEGENKSKRKMKTASQLEILEKTYAVETYPSETLRAELSAKLGLSDRQLQMWFCHRRLKDRKTPPVKRPRKDSPVKVTSSAAGTPVREEMEVGNEHPSGSGSGSSPFGHVLESRRVVPRPGTAVARIGADMPPMKRYYEPPQPISELRAIAFVEAQLGEPLREDGPILGMEFDPLPPDAFGAPIATVGQQKQGVRPYETKLYERPDAKPIKGAGRAVHEYQFLPEQPSVRTDTYERVGSHYYGSPADGPSARASLSTGRSFMHGNEQVASGYGFQGQMPNLNLLSQQGRQNHGLSSTSGDYDTVPRKNSLGSIGMDAHFGSHPITALDNPFISSDRRVTNDEDVLRMERKRKSEEARIAKEVEAHEKRIRKELEKQDILRRKREEQMRKEMERHDRERRKEEERLLREKQREEERYQREQRRELERREKFLQKESIRAEKMRQKEELRREKEAARVKAANDRAIARRIAKESMELIEDERLELMELVALSKGLPSILSLDSETLQNLESFRDMLTAFPPKSVQLRRPFTIQPWTDSEENIGNLLMVWRFLITFSDVLGLWPFTMDEFVQAFHDYDPRLLGEIHVALLRSIIKDIEDVARTPSIGLGANQNSAANPGGGHPQIVEGAYAWGFDIRSWQRHLNPLTWPEILRQFALSAGFGPKLKKRNVEETYLRDDNEGNDCEDIITNLRSGAAAENAVAIMQERGFSNPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTILEVADKIQKSGLRDLTTSKTPEASIAAALSRDGKLFERTAPSTYCVRPAYRKDPADADAILSAAREKIQIFKSGCSDGEEADDVERDEDSESDVVEDPEVDDLGADPNLKKEAQNSYEADGFQSKSVSENEKETLFAEAMETKGGLENAGEGLSSTHSEGFKEVISTGASADQSIDVAGISNKPTNPDQEDTDIDESNSGEPWVQGLMEGEYSDLSVEERLNALVALIGVAIEGNSIRIVLEERLEAANALKKQMWAEAQLDKRRMKEEYVMKMHYPSFMGNKTEQNVTMSTTEGRQSPMVAVDEKNNELSMNPVVHPEPFSDPQNDQSFLNNLPPERNLPMQDFSAGPENIPLQLPGYAAEKSRSQLKSYIGHKAEEMYVYRSLPLGQDRRRNRYWQFITSASRNDPNSGRIFVELRNGCWRLIDSEEGFDALVASLDARGVREAHLQSMLQRIEISFKETVRRNLQLSSIGRQSGGAVKTEDSEMARPTGCSVDIDSPSSTVCVSNSDATEPSASFSIELGRNDAEKFDALNRYQDFEKWMWKECINPSTLCALKYGKKRCTQLLGICDHCHDLHFFEDNHCPSCHRTYSPLDSNYSEHVAQCEEKHKVDLEWGFSSSSDSSPLRIKLLKAHLALIEVSVLPEALQPDWTDTYRKSWGMKLHASSSAEDLIQILTLLESNIRRDYLSSDFETTNELLGLSNASGCAVDDSLAAGSVPVLPWIPQTTAAVAIRLIELDASISYMLHQKLESHKDKGANDFIRVPAKFSVMKNMQDDESAEAPIEAVHLRDENWVEMGSGHTSSGRGRGGRRGRGRTRGGRSQRRVIGSRSESSKRSSAANNEKLGLLGWKGRTRGRGGRRRGRRTVRSRQKPVKQVVEDIPEEIIFKPPPRNLDREWNVETPTREPVEEAENVSSSESSEEYDDDNGQGTGDECDDLGVDEYSGPFNGKSEDVIEESDEIGDGDEDEEEEGEEEEDDEGDVDVGGYIIGDSDEERNGYEDGGHTGVGDEGGGYASSDYSE* 1773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0294 1772 Coils Coil 396 476 - -
Vvi12g0294 1772 MobiDBLite consensus disorder prediction 300 317 - -
Vvi12g0294 1772 MobiDBLite consensus disorder prediction 72 127 - -
Vvi12g0294 1772 CDD homeodomain 18 75 IPR001356 GO:0003677
Vvi12g0294 1772 Pfam HB1, ASXL, restriction endonuclease HTH domain 731 798 IPR007759 GO:0006355
Vvi12g0294 1772 MobiDBLite consensus disorder prediction 1575 1592 - -
Vvi12g0294 1772 MobiDBLite consensus disorder prediction 300 321 - -
Vvi12g0294 1772 MobiDBLite consensus disorder prediction 1666 1691 - -
Vvi12g0294 1772 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1134 1206 IPR028941 -
Vvi12g0294 1772 SMART HOX_1 17 79 IPR001356 GO:0003677
Vvi12g0294 1772 Gene3D - 3 76 - -
Vvi12g0294 1772 MobiDBLite consensus disorder prediction 1707 1735 - -
Vvi12g0294 1772 MobiDBLite consensus disorder prediction 1623 1663 - -
Vvi12g0294 1772 ProSiteProfiles DDT domain profile. 549 608 IPR018501 -
Vvi12g0294 1772 MobiDBLite consensus disorder prediction 1542 1772 - -
Vvi12g0294 1772 MobiDBLite consensus disorder prediction 72 86 - -
Vvi12g0294 1772 MobiDBLite consensus disorder prediction 823 860 - -
Vvi12g0294 1772 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 949 993 IPR028942 -
Vvi12g0294 1772 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 5 1772 IPR044977 GO:0006357
Vvi12g0294 1772 MobiDBLite consensus disorder prediction 928 953 - -
Vvi12g0294 1772 Pfam DDT domain 550 605 IPR018501 -
Vvi12g0294 1772 MobiDBLite consensus disorder prediction 1558 1574 - -
Vvi12g0294 1772 Coils Coil 374 394 - -
Vvi12g0294 1772 MobiDBLite consensus disorder prediction 831 853 - -
Vvi12g0294 1772 MobiDBLite consensus disorder prediction 1 26 - -
Vvi12g0294 1772 Pfam Homeodomain 18 74 IPR001356 GO:0003677
Vvi12g0294 1772 SMART testlast3 549 608 IPR018501 -
Vvi12g0294 1772 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Vvi12g0294 1772 MobiDBLite consensus disorder prediction 1605 1622 - -
Vvi12g0294 1772 MobiDBLite consensus disorder prediction 1740 1754 - -
Vvi12g0294 1772 SUPERFAMILY Homeodomain-like 15 74 IPR009057 -
Vvi12g0294 1772 ProSiteProfiles HARE-type HTH domain profile. 731 800 IPR007759 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0294 Vvi-Chr12 3840537 3862485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0294 1 1690 Homeobox Transcription Factor Family AT5G44180 52.184 0.0 1547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vvi12g0294 WSD 7.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0294 - - vvi:100250601 3168.64