Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0292 ATGATTCTCTTACTTCTCTTGTTTCTCTCTCTACCTCACGCTCTCTCTCTAAACCAGGAGGGCCTTTATCTCCTTAAAGCCAAAGAAGGACTCGACGACCCATTCGGTGCCCTCTCCTCTTGGAAGGCCCGAGACGAGTTACCATGTAATTGGAAAGGAATCGTCTGCGACTCACTCAACCGGATCAACTCGGTCAATCTCTCTAGCACAGGCGTCGCCGGACCCTTTCCCAGCTTCCTTTGCCGACTCCCTTTCCTCTCCTCCATTGATCTCTCCAACAATTCCATTGACTCATCTGTTGCCGTCGATTTCGGAGCGTGTCAGCATATCAAGTCCCTGAACCTATCTGATAACTTGCTGGTGGGCTCTATCCCTGCTTCGCTTTCCAGAATTTCAGATTTGCGCGAACTCGTTCTAAGTGGAAACAATTTTTCCGGGGAGATTCCGGCGAGTTTCGGTGAGTTTCGGCGACTTGAGAGGCTGTGTCTTGCTGGAAATCTTCTCGATGGTACGATACCTTCTTTTCTTGGTAACATTTCGAGTCTCAAAGTTCTGGAACTCGCTTATAATCTATTCAGGCCGAGTCAACTCAGCCCAGAACTCGGTAACTTGAGGAATCTGGAAGTTCTCTGGATCAGCAACTCGAACCTCTTTGGTGAGATCCCGGCGAGTTTTGGCCAATTGACTCTCTTAACAAATTTGGACTTGTCCTCAAACCAGCTCAATGGTTCGATACCGAGCTCGCTCAGTGGGTTATCCAGAATTGTTCAGATTGAGCTCTACAGCAACTCGTTATCAGGCGAGTTGCCGGCGGGAATGTCGAATTGGACGAGGTTGCTACGACTGGACGCGTCAATGAACAAGCTTGAAGGTCCAATTCCGGAGGAGTTGTGCGGATTACAACTTGAATCACTGTCACTGTACCAAAACCGATTCGAAGGGTTTTTACCAGAGAGTATAGCTGGGTCGAAAAACTTATACGAACTCAGATTGTTCGACAATCGACTCAGAGGAAGATTACCAAGTGAGCTTGGAAAGAACTCCCGTTTAAACACTCTGGATGTGTCCAGCAATCACTTTTTCGGCGAAATTCCGGCGAATTTATGCGCAAATGGAGCTTTAGAAGAACTTCTTATGATTAAAAATTCTTTTTCAGGGAATATTCCAGCGAGTCTCGAGAAATGCCAGACCCTGAGACGTGTTCGGTTGAGCTACAACCAGCTCTCCGGCGAGGTTCCGCCGGAAATATGGGGTTTACCCCATGTCTATCTGCTTGATCTAAGTGTTAATTCACTGTCTGGGCATATCTCTAACTCGATCTCCGGTGCTCACAACCTTTCTAGTCTGTCAATTTCAAGTAACCAGTTCTCTGGATCGCTTCCCAGTGAAATCGGATCGTTGAGGAACCTTGGTGAATTTTCGGCCAGCCAAAACAAGATAACAGGCAAGATTCCGCAGACTTTTGTTCATTTGAGCAAGTTGTCTAGTCTCATCCTTAGTAATAATGAGCTTTCTGGCGAGGTTCCAGCTGGAATCGAGTCCTTGAAGCAGCTCAATGAGCTTAGGTTGGCTAACAATAAGTTATCTGGGAACATCCCTGATGGAATTGGGAGTTTGCCAGTGCTTAATTATCTTGATCTTTCCGCCAACTCGCTTTCTGGGGAAATTCCATTCTCCTTGCAGAATTTGAAGCTCAATTTGCTGAATCTATCCTACAATCGACTCTCTGGTGACATTCCTCCCCTTTATGCTAAAAAATATTTTCGAGATAGTTTTGTGGGCAATCCAGGTTTATGTGGTGAGATAGATGGGCTTTGTCCTGGGAATGGTGGAACCGTAAACCTAGAATATTCATGGATACTTCCATCCATTTTTACTCTTGCTGGCATAGTTCTTATTGTTGGGGTTGTTTTGTTCTGCTGGAAGTACAAGAATTTCAAGAAAAATAAGAAAGGAATGGTGATATCCAAGTGGAGATCCTTTCACAAATTGGGTTTCAGTGAGGTTGATATCGTGGATTGCCTTAATGAAGATAATGTGATCGGCAGTGGATCGGCAGGGAAGGTATATAAAGTTGTATTCGCCAATGGTGAAGCAGTTGCAGTGAAGAAACTATGGGGAGGGTCAAAGAAAGATACTGATTCTGAGAAAGATGGATTGGAGAACGACAGGGTGGACAAAGATGGGTTTGAGATTGAAGTTGAAACCTTGGGAAAGATTCGACACAAGAATATCGTTAGGTTATGGTGTTGTTGCAATACTGGGTATTGCAAACTTTTGGTTTACGAATATATGCCAAATGGGAGTTTGGGTGATATGCTGCATAGTAGCAAGGGGGGCTTACTGGACTGGCCAACCAGGTACAAGATAGCCTTGGATGCTGCCGAGGGGCTGTCTTATTTGCATCATGACTGCGTTCCTCCCATTGTTCATAGGGATGTGAAATCAAACAACATATTGCTGGATGGAGAGTTTGGTGCTAGAGTGGCTGATTTTGGAGTTGCTAAAGTTTTCCAGGGGGTCGGAAAGGGGGAAGAGTCCATGTCTGTGATAGTTGGTTCTCGTGGTTACATCGCACCAGAATATGCCTACACTCTTCGAGTGAATGAAAAGAGCGACATTTACAGCTTTGGGGTGGTCATTCTAGAGCTGGTGACAGGTCGACTTCCAGTGGACCCAGAGTTTGGGGAGAAGGATTTGGTGAAATGGGTGTCTGCCTCCTTGGATCAGAAAGGAGGAGAGCATGTCATCGATCCCAGACTCGATTGCAGCTTCAATGAAGAAATTGTCAGGGTCCTAAATGTAGGTCTCCTCTGTACCAACGCACTTCCCATTAACCGCCCTCCAATGCGAAGAGTGGTAAAGATGCTGCAGGAGGCGGGTGCCAGGAACAAGCCCAAGACTACTGCAAAGAAGGATGGGAAGCTTTCTCCTTATTACCATGAAGATGCCTCTAACCACGTGTAG 2967 0.4597 MILLLLLFLSLPHALSLNQEGLYLLKAKEGLDDPFGALSSWKARDELPCNWKGIVCDSLNRINSVNLSSTGVAGPFPSFLCRLPFLSSIDLSNNSIDSSVAVDFGACQHIKSLNLSDNLLVGSIPASLSRISDLRELVLSGNNFSGEIPASFGEFRRLERLCLAGNLLDGTIPSFLGNISSLKVLELAYNLFRPSQLSPELGNLRNLEVLWISNSNLFGEIPASFGQLTLLTNLDLSSNQLNGSIPSSLSGLSRIVQIELYSNSLSGELPAGMSNWTRLLRLDASMNKLEGPIPEELCGLQLESLSLYQNRFEGFLPESIAGSKNLYELRLFDNRLRGRLPSELGKNSRLNTLDVSSNHFFGEIPANLCANGALEELLMIKNSFSGNIPASLEKCQTLRRVRLSYNQLSGEVPPEIWGLPHVYLLDLSVNSLSGHISNSISGAHNLSSLSISSNQFSGSLPSEIGSLRNLGEFSASQNKITGKIPQTFVHLSKLSSLILSNNELSGEVPAGIESLKQLNELRLANNKLSGNIPDGIGSLPVLNYLDLSANSLSGEIPFSLQNLKLNLLNLSYNRLSGDIPPLYAKKYFRDSFVGNPGLCGEIDGLCPGNGGTVNLEYSWILPSIFTLAGIVLIVGVVLFCWKYKNFKKNKKGMVISKWRSFHKLGFSEVDIVDCLNEDNVIGSGSAGKVYKVVFANGEAVAVKKLWGGSKKDTDSEKDGLENDRVDKDGFEIEVETLGKIRHKNIVRLWCCCNTGYCKLLVYEYMPNGSLGDMLHSSKGGLLDWPTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGEFGARVADFGVAKVFQGVGKGEESMSVIVGSRGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRLPVDPEFGEKDLVKWVSASLDQKGGEHVIDPRLDCSFNEEIVRVLNVGLLCTNALPINRPPMRRVVKMLQEAGARNKPKTTAKKDGKLSPYYHEDASNHV* 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0292 988 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 765 974 - -
Vvi12g0292 988 FunFam Receptor-like protein kinase HSL1 658 764 - -
Vvi12g0292 988 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 17 179 - -
Vvi12g0292 988 MobiDBLite consensus disorder prediction 958 988 - -
Vvi12g0292 988 FunFam Receptor-like protein kinase HSL1 301 608 - -
Vvi12g0292 988 SMART serkin_6 675 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0292 988 Pfam Protein kinase domain 677 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0292 988 Pfam Leucine rich repeat N-terminal domain 18 57 IPR013210 -
Vvi12g0292 988 Gene3D Ribonuclease Inhibitor 194 300 IPR032675 -
Vvi12g0292 988 Gene3D Phosphorylase Kinase; domain 1 658 764 - -
Vvi12g0292 988 Gene3D Transferase(Phosphotransferase) domain 1 765 983 - -
Vvi12g0292 988 SUPERFAMILY Protein kinase-like (PK-like) 669 957 IPR011009 -
Vvi12g0292 988 MobiDBLite consensus disorder prediction 965 988 - -
Vvi12g0292 988 Pfam Leucine rich repeat 86 144 IPR001611 GO:0005515
Vvi12g0292 988 SUPERFAMILY L domain-like 41 300 - -
Vvi12g0292 988 Gene3D Ribonuclease Inhibitor 16 192 IPR032675 -
Vvi12g0292 988 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 225 959 - -
Vvi12g0292 988 ProSiteProfiles Leucine-rich repeat profile. 564 586 IPR001611 GO:0005515
Vvi12g0292 988 Gene3D Ribonuclease Inhibitor 301 606 IPR032675 -
Vvi12g0292 988 SMART LRR_typ_2 491 514 IPR003591 -
Vvi12g0292 988 SMART LRR_typ_2 515 539 IPR003591 -
Vvi12g0292 988 SMART LRR_typ_2 83 107 IPR003591 -
Vvi12g0292 988 SMART LRR_typ_2 179 204 IPR003591 -
Vvi12g0292 988 SMART LRR_typ_2 228 252 IPR003591 -
Vvi12g0292 988 Pfam Leucine Rich Repeat 206 227 IPR001611 GO:0005515
Vvi12g0292 988 SUPERFAMILY RNI-like 210 573 - -
Vvi12g0292 988 FunFam Leucine-rich receptor-like protein kinase family protein 197 295 - -
Vvi12g0292 988 ProSiteProfiles Protein kinase domain profile. 675 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0292 988 PRINTS Leucine-rich repeat signature 231 244 - -
Vvi12g0292 988 PRINTS Leucine-rich repeat signature 539 552 - -
Vvi12g0292 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0292 Vvi-Chr12 3804556 3807803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0292 12 987 Receptor kinase-like Gene Family AT1G28440 61.648 0.0 1184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi12g0292 Pkinase 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0292 - - vvi:100250523 1899.02