Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0291 ATGACTTGGTGCAATGACTGCGACAACAGCCGGATGATCGAGGGAAGCTCCCCGCCGTCGACGGATAACAGTACTGTTATAGCTGAAAAACCTAAGGACACTGCAACTAGAACTTGTCCTTCATGTGGTCATCAGATCAAATTGCAAGAACAGGCTCGAATTCATGATCTGCCAGGGCTACCGGCCGGAGTGAAGTTCGATCCGACTGATCAGGAGCTTCTTGAACATTTAGATGGGAAGGTGAGGTGTGATGACCATAAGCTTCATCCTCTCATTGATGAATTCATCCCAACTCTTGAAGGAGAGAATGGAATTTGCTACACCCACCCAGAAAAGTTACCAGGGGTGAGCAAAGATGGTCTGATCCGCCATTTCTTCCATCGCCCTTCGAAGGCATACACTACGGGAACTCGAAAAAGAAGAAAAGTGAGCACAGACTCAGACGGTGGGGAGACCCGGTGGCATAAAACAGGCAAGACTAGACCAGTTTTTGTTGGTGGCAAGGTGAAGGGGTACAAGAAAATCCTTGTGCTCTACACCAACTATGGGAAGCAAAGAAAGCCCGAGAAAACGAATTGGGTTATGCACCAGTACCACCTTGGCAATAACGAAGAAGAGAAAGATGGAGAACTTGTAGTTTCCAAAGTTTTCTACCAGACACAACCACGACAATGCAGTTCCATCATGAAAGACTCCCTCCCCTCAAAATTAAAGGATCATCACAGCGGCCATGAGAGTCCAAATCTTAGAAACAATGCCCTTGTGGAGTACTATAATCCCAATTCTTTCATATCCTTCGACCAAGGCAGCCAAAATAGATTGAGCCACGCCCGGCTAATTCCTAATTTCACAGTCCATGATGGGTCTACCTTCTTACTCGAAAATGTGAAGGAACATATGGGGAGGCAATAG 912 0.4649 MTWCNDCDNSRMIEGSSPPSTDNSTVIAEKPKDTATRTCPSCGHQIKLQEQARIHDLPGLPAGVKFDPTDQELLEHLDGKVRCDDHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVSTDSDGGETRWHKTGKTRPVFVGGKVKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGNNEEEKDGELVVSKVFYQTQPRQCSSIMKDSLPSKLKDHHSGHESPNLRNNALVEYYNPNSFISFDQGSQNRLSHARLIPNFTVHDGSTFLLENVKEHMGRQ* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0291 303 Gene3D NAC domain 69 223 IPR036093 GO:0003677|GO:0006355
Vvi12g0291 303 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 24 251 IPR044799 GO:0003700
Vvi12g0291 303 MobiDBLite consensus disorder prediction 7 26 - -
Vvi12g0291 303 ProSiteProfiles NAC domain profile. 60 219 IPR003441 GO:0003677|GO:0006355
Vvi12g0291 303 MobiDBLite consensus disorder prediction 139 158 - -
Vvi12g0291 303 MobiDBLite consensus disorder prediction 133 158 - -
Vvi12g0291 303 Pfam No apical meristem (NAM) protein 61 200 IPR003441 GO:0003677|GO:0006355
Vvi12g0291 303 SUPERFAMILY NAC domain 53 219 IPR036093 GO:0003677|GO:0006355
Vvi12g0291 303 FunFam NAC domain-containing protein 73 69 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0291 Vvi-Chr12 3799298 3800900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0291 1 236 NAC Transcription Factor Family AT4G28500 73.418 8.44e-127 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi12g0291 NAM 2.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0291 - - vvi:100267787 630.557