Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0290 ATGGAGTGCTCATCCAAACATAGATCCATCACCGCCAAGAAAAGGCTCACCCAGGACCAGCTTCACCTCTTAGAGACAAGCTTCATCACCAATCCCAAGCTTGAAGGAGAGAGCAAGCAGGAGCTGGCCTCCAAGCTTGGTCTCCCACCCAAACAGGTTGCCATTTGGTACCAAAACAAGAGAGCCCGCTGCAAAACCGAGGCCATTGAGCACGAGTACAAGGCCACCCAACTTCAACTCCAAAATGTCTTGGCACATAACCAGCGGCTCCAGAGTGAAGTTGGCAGGCTCACACATAAGCTCAACCAGGCTCATCACTTGCTCTTTCTTGCATCTAACCCCTCTGCTGCATCTGCTTCTGCTTCTGCTTCTACTTCTACTTCTGCTCCTAGTTTCAGTGTTCCTGGAAGCTCCAGCTTGAACTCCCCTGCAAGCATGAATTCCATCTGGGAAAATGCTGAAGTTCTGCCTATTATGGAGGAGCTTTATGCCTGTTTGCTCGAATGA 507 0.501 MECSSKHRSITAKKRLTQDQLHLLETSFITNPKLEGESKQELASKLGLPPKQVAIWYQNKRARCKTEAIEHEYKATQLQLQNVLAHNQRLQSEVGRLTHKLNQAHHLLFLASNPSAASASASASTSTSAPSFSVPGSSSLNSPASMNSIWENAEVLPIMEELYACLLE* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0290 168 Coils Coil 73 93 - -
Vvi12g0290 168 PRINTS Lambda-repressor HTH signature 47 63 IPR000047 GO:0003677
Vvi12g0290 168 PRINTS Lambda-repressor HTH signature 38 47 IPR000047 GO:0003677
Vvi12g0290 168 SUPERFAMILY Homeodomain-like 11 75 IPR009057 -
Vvi12g0290 168 Pfam Homeodomain 13 65 IPR001356 GO:0003677
Vvi12g0290 168 Gene3D - 3 82 - -
Vvi12g0290 168 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 8 126 IPR045224 GO:0003700
Vvi12g0290 168 SMART HOX_1 9 71 IPR001356 GO:0003677
Vvi12g0290 168 MobiDBLite consensus disorder prediction 120 142 - -
Vvi12g0290 168 ProSiteProfiles 'Homeobox' domain profile. 7 67 IPR001356 GO:0003677
Vvi12g0290 168 CDD homeodomain 13 65 IPR001356 GO:0003677
Vvi12g0290 168 ProSitePatterns 'Homeobox' domain signature. 42 65 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0290 Vvi-Chr12 3787843 3788349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0290 13 101 Homeobox Transcription Factor Family AT3G01470 52.083 4.04e-24 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vvi12g0290 Homeodomain 4.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0290 - - vvi:100262631 280.411