Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0287 ATGTTGCAGAAGATGGCTGCAGAAGCAATTCCAAATGGTTTCATTCAAAATCCAATTGGTGGATCCAATCCTCCCACCATCAAGAAGAAGAGAAACCTTCCAGGAACCCCAGATCCTGAAGCCGAAGTCATAGCCTTGTCACCGAAGACACTCATGGCCACAAACAGATTCTTATGTGAGATATGTGGAAAAGGTTTTCAGAGGGATCAAAATCTGCAACTGCATCGGCGAGGACACAACCTTCCTTGGAAGCTCAAGCAAAGGAGCAGCAAGGAACCCAGGAAGCGTGTCTACGTCTGTCCCGAAAAGACCTGTGTCCACCACCACCCTTCGAGGGCTCTAGGAGACCTGACTGGGATAAAAAAGCACTTCTGTCGGAAGCACGGGGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGATACGCCGTGCAGTCAGACTGGAAAGCTCACACCAAAACTTGCGGCACTAGGGAATACAAATGTGACTGTGGCACTCTATTTTCAAGGCGAGATAGCTTCATCACTCATAGGGCCTTCTGTGATGCCCTAGCAGAAGAGACGGCTAGAGTTACTGCTGCCTCCAACATCAACAATGGCACTATCAATTATCATTTCATGGGGACTTCACTTGCACCAAGCATGCCACAACATTTCTCCTCTATCTTCAAGCCTATCTCAAGCAACGACGAAGCAACCGATCAAACAAGACGGGGACTCTCCCTGTGGATGGGCCAAGGATCTCAAGGCCATGAAACAATGGGGACGAATCTCCAAGAGATTCATCAACTCAGATCCTCAATGAGTCCAGGTTCGGTGTATGCTGACCCACTTGTTTCTTGTTCAAATCCTCCACCATCAAGCTATCAATTGAGTTGGGTGTTTGGAAGCAAACAGTCTTCAAATAACACGGAAGATCAACTAACAAGCAGTACTTCACTTCCATTAAGCAATGTTAAGGAAGCTGCAGGAAGTCAGATTGTGAGTGTCCCTTCCTTGTACAGCTCCCAACACCACTCCCATCAAACACCTCTAGGAAACATGTCTGCGACAGCCTTATTGCAGAAAGCTGCCCAAATGGGAGCAACTTCTGCTGATCCTTTCCTTGGGAGCTTTGGGTTGAAGTGTGACAGTAGTCTAGTTCAAGATGGAAACAAATTTTGTGGGTTGTATACTGCAAACCAACTTCCAACCAACGACATGGAGAATCCGAAGGATCTCTCCACTTTCAATCAGTTGCAAATGTACCCCGCAAAACGCCGCAACACCCAGAACGATGACAGCACTGGGGGCCAAACTAGAGATTTCTTAGGTGTTGGGGTGCAAACCATCTGCCACCCATCTTCAATCAATGGATGGATGTGA 1365 0.4755 MLQKMAAEAIPNGFIQNPIGGSNPPTIKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHTKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVTAASNINNGTINYHFMGTSLAPSMPQHFSSIFKPISSNDEATDQTRRGLSLWMGQGSQGHETMGTNLQEIHQLRSSMSPGSVYADPLVSCSNPPPSSYQLSWVFGSKQSSNNTEDQLTSSTSLPLSNVKEAAGSQIVSVPSLYSSQHHSHQTPLGNMSATALLQKAAQMGATSADPFLGSFGLKCDSSLVQDGNKFCGLYTANQLPTNDMENPKDLSTFNQLQMYPAKRRNTQNDDSTGGQTRDFLGVGVQTICHPSSINGWM* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0287 454 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Vvi12g0287 454 SMART c2h2final6 133 153 IPR013087 -
Vvi12g0287 454 SMART c2h2final6 57 79 IPR013087 -
Vvi12g0287 454 FunFam protein indeterminate-domain 5, chloroplastic-like 111 190 - -
Vvi12g0287 454 Gene3D Classic Zinc Finger 89 181 - -
Vvi12g0287 454 Gene3D Classic Zinc Finger 53 80 - -
Vvi12g0287 454 FunFam protein indeterminate-domain 12-like 36 104 - -
Vvi12g0287 454 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 442 IPR031140 -
Vvi12g0287 454 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Vvi12g0287 454 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0287 Vvi-Chr12 3778166 3780152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0287 23 454 IDZ Gene Family AT1G03840 52.929 2.27e-152 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi12g0287 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0287 K25870 - vvi:100252370 945.266