Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0280 ATGGATCCGGCAAATAGTGAGATGTCAAGTGAGCTGCTTCAAGCTCAAGCTCATGTCTGGAACCACATATTCAATTTCGTCAACTCTATGTCACTGAAATGTGCTATTCAACTAGGCATCCCAGACATCATCCACAACCATGGCAAGCCCATGACTCTTCCTCAGCTGGTTGCTAAGCTCCCAGTCCACCCAAAAAAGACCCAGTATGTGTACCGTCTCATGCGTGTTCTTGTTCAATCTGACTTCTTCGCTGCGCAAAGAGCCCAACAGAGTGAGGAAGAAGAGGGGTATGTGCTTACGCATGCCTCTCGGCTTCTCCTAAAGGATGACTCCTTGAGCGTAAGGCCCTTCTTGCTTGCCATGCTCGACCCAACTTTAACTAAACCATGGCATTATGTGAGTGCTTGGTTTCAAAATGATGATCCCACTCCGTTTGACACTGCTCACGAGCGGACATTATGGGATTATGCTGGCCATGAACCTCAGCTCAACTATTTCTTCAACGAAGCCATGGCTAGTGATGCTCGCTTAGTCACTAGCGTGCTGGTTAAGGAGGGCAAGGGCGTATTTGAGGGGTTGAATTCGTTAGTTGATGTAGGGGGTGGCACGGGAACAGTGGCTAAGGCCATTGCCAACGCTTTCCCACACTTGAAATGCACTGTGTTAGATCTCCCCCATGTGGTTGCTGGCTTGCAAGGGAGCAAGAACTTGAACTACTTCGCAGGGGATATGTTTGAGGCCATTCCTCCTGCAGATGCAATTTTACTCAAGTGGATATTGCATGACTGGAGCGATGAGGAATGCGTGAAAATACTAAAGCGATGCAGGGAAGCAATTCCGAGCAAGGAAAGGGGAGGAAAGGTGATTATCATAGACATGATGGTGAAGAACCAGAAAGGAGACTGCAAGTCCAGGGAAACACAGCTGTTCTTCGATATGCTGATGATGGTTTTGGTCACGGGTAAAGAGAGGGAGGAGAAAGAATGGGAGAAGCTATTCTTGGAAGCTGGTTTCAGTCACTACAAGATAACACCCATTTTGGGTTTGAGGTCGCTCATCGAGGTTTATCCTTGA 1074 0.4786 MDPANSEMSSELLQAQAHVWNHIFNFVNSMSLKCAIQLGIPDIIHNHGKPMTLPQLVAKLPVHPKKTQYVYRLMRVLVQSDFFAAQRAQQSEEEEGYVLTHASRLLLKDDSLSVRPFLLAMLDPTLTKPWHYVSAWFQNDDPTPFDTAHERTLWDYAGHEPQLNYFFNEAMASDARLVTSVLVKEGKGVFEGLNSLVDVGGGTGTVAKAIANAFPHLKCTVLDLPHVVAGLQGSKNLNYFAGDMFEAIPPADAILLKWILHDWSDEECVKILKRCREAIPSKERGGKVIIIDMMVKNQKGDCKSRETQLFFDMLMMVLVTGKEREEKEWEKLFLEAGFSHYKITPILGLRSLIEVYP* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0280 357 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Vvi12g0280 357 SUPERFAMILY "Winged helix" DNA-binding domain 8 110 IPR036390 -
Vvi12g0280 357 Gene3D - 2 106 IPR036388 -
Vvi12g0280 357 FunFam Coniferyl alcohol 9-O-methyltransferase 3 106 - -
Vvi12g0280 357 CDD AdoMet_MTases 196 291 - -
Vvi12g0280 357 PIRSF O-mtase 1 357 IPR016461 GO:0008168
Vvi12g0280 357 Gene3D Vaccinia Virus protein VP39 107 357 IPR029063 -
Vvi12g0280 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 356 IPR029063 -
Vvi12g0280 357 FunFam O-methyltransferase ZRP4 108 357 - -
Vvi12g0280 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 357 IPR016461 GO:0008168
Vvi12g0280 357 PANTHER O-METHYLTRANSFERASE 11 342 IPR016461 GO:0008168
Vvi12g0280 357 Pfam O-methyltransferase domain 130 339 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0280 Vvi-Chr12 3698249 3699569 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0280 30 343 Monolignol Biosynthesis Gene Families AT5G54160 33.856 5.54e-56 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0280 - K16040 vvi:100257423 720.694