Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi12g0278 | ATGTGTATTTTTTCTTGGGAAGATATTTGGGGGAGATTAACTATAGATAGGTTAATAAAGAGGGGATTGTCCATGTGGATATTGCATGACTGGAGCGATGAGGAATGCGTGAAAATACTAAAGCGATGCAGGGAAGCAATTCCGAGCAAGGAAAAGGGAGGAAAGGTGATTATCATAGACATGATGATGAAGAACCAGAAAGGAGACAGCAAGTCCAGGGAAACACAGCTGTTCTTCGATATGCTGATGATGGTTATGGTCACGGGTAAAGAGAGGGAGGAGAAAGAATGGGAGAAGCTTTTCTTGGATGCTGGTTTCAGTCACTACAAGATAACACCCATTTTGGGTTTGAGGTCGCTCATCGAGGTTTATCCTTGA | 378 | 0.4286 | MCIFSWEDIWGRLTIDRLIKRGLSMWILHDWSDEECVKILKRCREAIPSKEKGGKVIIIDMMMKNQKGDSKSRETQLFFDMLMMVMVTGKEREEKEWEKLFLDAGFSHYKITPILGLRSLIEVYP* | 126 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi12g0278 | 125 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 1 | 125 | IPR016461 | GO:0008168 | |
| Vvi12g0278 | 125 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 23 | 124 | IPR029063 | - | |
| Vvi12g0278 | 125 | Gene3D | Vaccinia Virus protein VP39 | 22 | 125 | IPR029063 | - | |
| Vvi12g0278 | 125 | FunFam | - | 22 | 125 | - | - | |
| Vvi12g0278 | 125 | Pfam | O-methyltransferase domain | 25 | 107 | IPR001077 | GO:0008171 | |
| Vvi12g0278 | 125 | PANTHER | O-METHYLTRANSFERASE | 25 | 110 | IPR016461 | GO:0008168 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi12g0278 | Vvi-Chr12 | 3684046 | 3690713 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi12g0278 | 19 | 125 | Monolignol Biosynthesis Gene Families | AT1G51990 | 42.105 | 3.73e-18 | 76.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi12g0278 | - | K16040 | vvi:100247173 | 205.297 |