Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0275 ATGGTTAGCGACTCCCGGCTGATCGCAAACATGATTGTTAGACAGTATGAGGAGGTGTTTGAAGGGTTGACCTCTCTGGTGGATGTTGGGGACGGCACAGGAACAATGGCCAAGGCCATTGCTAAAGCATTTCCACAATTGAAGTACATTGTGTTTGATCAACCACATGTTGCTAACTTGGAGGTTGGTGAGAACTTGGAGATTGTTGGAGGGAATATATTTGAAGCAATTCCTCCGGCCGATGCAATCTTACTAAAGAAGTGCAAAGGGGCGATTCCAAATAAGGGAGGAAAGGTGATAATCATAGACATGGTAGTGGAGAGCAACAAAGGGGATAATAAGGAGGTGGAAACACAGCTCTTCATGGACATGCTTATGATGGTTGTAGTTGCAGGGAAAGAGAGAAATGAGAAAGAATGGGAGAAGCTATTCTTGGCTGCAGGCTTCACTCACTATAAGATAACTCCAGCATTGGGTTTAAGGTCCCTCATTGAGGTTTACCCATGA 507 0.4477 MVSDSRLIANMIVRQYEEVFEGLTSLVDVGDGTGTMAKAIAKAFPQLKYIVFDQPHVANLEVGENLEIVGGNIFEAIPPADAILLKKCKGAIPNKGGKVIIIDMVVESNKGDNKEVETQLFMDMLMMVVVAGKERNEKEWEKLFLAAGFTHYKITPALGLRSLIEVYP* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0275 168 Gene3D Vaccinia Virus protein VP39 1 168 IPR029063 -
Vvi12g0275 168 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 168 IPR016461 GO:0008168
Vvi12g0275 168 PANTHER O-METHYLTRANSFERASE 1 153 IPR016461 GO:0008168
Vvi12g0275 168 Pfam O-methyltransferase domain 1 149 IPR001077 GO:0008171
Vvi12g0275 168 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 167 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0275 Vvi-Chr12 3671121 3671931 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0275 1 154 Monolignol Biosynthesis Gene Families AT5G54160 34.884 8.06e-21 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0275 - K16040 vvi:100242033 301.982