Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0274 ATGAAATATGTGAGCCAGTTTTGTGTTCCTTTGCTGCTGCTCTATACTTGTGGTTTGTTTTTCCTTTTTGTAGCACTTATTTTACTGTTCACAACAGAAGAACCAAATGGCCAGTGGAATTTGGAATATACTACTAGTGTTATTGTTTTTTGGATATTGCATGACTGGAGCGATGAGGAATGCGTGAAAATACTAAAGCGATGCAGGGAAGCAATTCCGAGCAAGGAAAAGGGAGGAAAGGTGATTATCATAGACATGATGATGAAGAACCAGAAAGAAGACTGCAAGTCCAGGGAAACACAGCTGTTCTTCGATATGCTGATGATGGTTATGGTCACGGGTAAAGAGAGGGAGGAGAAAGAATGGGAGAAGCTTTTCTTGGATGCTGGTTTCAGTCACTACAAGATAACACCCATTTTGGGTTTGAGGTCGCTCATCGAGGTTTATCCTTGA 453 0.4128 MKYVSQFCVPLLLLYTCGLFFLFVALILLFTTEEPNGQWNLEYTTSVIVFWILHDWSDEECVKILKRCREAIPSKEKGGKVIIIDMMMKNQKEDCKSRETQLFFDMLMMVMVTGKEREEKEWEKLFLDAGFSHYKITPILGLRSLIEVYP* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0274 150 Pfam O-methyltransferase domain 47 132 IPR001077 GO:0008171
Vvi12g0274 150 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 150 IPR016461 GO:0008168
Vvi12g0274 150 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 47 149 IPR029063 -
Vvi12g0274 150 Gene3D Vaccinia Virus protein VP39 30 150 IPR029063 -
Vvi12g0274 150 PANTHER O-METHYLTRANSFERASE 47 135 IPR016461 GO:0008168
Vvi12g0274 150 FunFam - 47 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0274 Vvi-Chr12 3668865 3670004 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0274 47 150 Monolignol Biosynthesis Gene Families AT1G51990 40.741 9.93e-18 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0274 - K16040 vri:117925800 209.92