Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0273 ATGGAAGCACACAATGAACTTTGTAAACTCAATGGCACTGAAATGTGCAATTCAACTTGGCATTCCAGATGTCATCCGCAGCCACGGCCAACCAGTGGCTCTTTCTCAACTGATCACTGCACTCTCGCTCCACGCCTCGACAGACTCATGCGTGTTCTTGTTCACTCTGGCTTCTTTGCTCAACAAAAACTACTCCATAACAGTGAGGAAGAAGAAGGGTATTCACTTACTTTTGCTTCTCAGTTCCTACTAAAAGATGAGTTTTTCAGTGGAGTACCATTATTGCTGCTTCAGATGGATCTAATATTAGCCGCTCCATGGCATTTCTTGGGCGATTGGTTCCAAAATGAAGACCCCACCCCATTTCATACCGCACGTAGGAAGTCATTTTTGGATTACGCAATTCATGAACCAAAGCTCAACGATATATTTAATGAAACCATGGTTAGCGACCCCCGGCTGATCGCAAACATGTTTGTTAGACAATATAAGGAGGTGTTTGAAGGGTTGACCTCTCTGGTGGATGTTGAGGTCGGCATAGGAACAATGCCCAAGGCCATTGCTAAAGCATTTCCACAATTGAAGTGCATTGTGTTTGATCAACCACATGTTGTTTCTAACTTGGAGTGGATAATACATGACTGGAGTGACGAAGAATGTGTGAAGATACTGAAGAAGTGCAAAGGGGTGATTCCAAATAAGGGAGGAAAGGTGATAATCATAGACATGGTAGTGGAGAGCAACAAATGCGATAATAAGGCGGTGGAAACACCGCTCTTCATAGACATGCTTAGGATGGTTGTAGTTGCAGGGAAAGAGAGAAATGAGAAAGAATGGGAGAAGCTATTCTTGGCTGCAGGCTTCACTCACTATAAGATAACTCCAGCATTGGGTTTAAGGTCCCTCATTGAGGTTTACCCATGA 924 0.4372 MEAHNELCKLNGTEMCNSTWHSRCHPQPRPTSGSFSTDHCTLAPRLDRLMRVLVHSGFFAQQKLLHNSEEEEGYSLTFASQFLLKDEFFSGVPLLLLQMDLILAAPWHFLGDWFQNEDPTPFHTARRKSFLDYAIHEPKLNDIFNETMVSDPRLIANMFVRQYKEVFEGLTSLVDVEVGIGTMPKAIAKAFPQLKCIVFDQPHVVSNLEWIIHDWSDEECVKILKKCKGVIPNKGGKVIIIDMVVESNKCDNKAVETPLFIDMLRMVVVAGKERNEKEWEKLFLAAGFTHYKITPALGLRSLIEVYP* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0273 307 Pfam O-methyltransferase domain 107 206 IPR001077 GO:0008171
Vvi12g0273 307 Pfam O-methyltransferase domain 208 288 IPR001077 GO:0008171
Vvi12g0273 307 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 307 IPR016461 GO:0008168
Vvi12g0273 307 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 93 306 IPR029063 -
Vvi12g0273 307 SUPERFAMILY "Winged helix" DNA-binding domain 41 87 IPR036390 -
Vvi12g0273 307 PIRSF O-mtase 33 209 IPR016461 GO:0008168
Vvi12g0273 307 PIRSF O-mtase 207 307 IPR016461 GO:0008168
Vvi12g0273 307 Gene3D - 33 83 IPR036388 -
Vvi12g0273 307 Gene3D Vaccinia Virus protein VP39 85 208 IPR029063 -
Vvi12g0273 307 PANTHER O-METHYLTRANSFERASE 43 292 IPR016461 GO:0008168
Vvi12g0273 307 Gene3D Vaccinia Virus protein VP39 209 307 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0273 Vvi-Chr12 3666327 3667579 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0273 46 305 Monolignol Biosynthesis Gene Families AT5G54160 32.872 1.88e-35 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0273 - K16040 vvi:100242033 469.544