Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0271 ATGGAATGTTTGGGAAGTCGAGAGAGAGCCACTGAGCTACTTCAAGCACAAGTCCATACATGGAAGCACACAACGAACTTTGTAAACTCAATGGTACTGAAATGTGCAATTCAACTTGGCATTCCAGATGTCATCCACAGCCACGGCCAACCCATGGCTCTTTCTCAACTGATCACTGCACTCTCGCTCGAACCAACAAAGGCTCCATGCCTCTACAGACTCATGCGTGTTCTTGTTCACTCTGGCTTCTTTGCTCAACAAAAACTACTCCATAACAGTGAGGAAGAAGAAGGGTATTCACTTACTTTTGCTTCTCAGTTCCTACTAAAAGATGAGCCTGTCAGTGGAGTACCATTCTTGCTGCTTCAGCTGGATCCAATATTAACCGCTCCATGGCATTTCTTGGGCGATTGGTTCCAAAATGAAGACCCCACCCCATTTCATACCGCACACAGGAAGTCATTTTGGGATTACGCAGTTCATGAACCGAAGCTCAACGATATATTTAATGAAACCATGGTTAGCGACTCCCGGCTGATCGCAAACATGATTGTTAGACAGTATAAGGAGGTGTTTGAAGGGTTGGCCTCTCTGGTGGATGTTGGGGGTGGCACAGGAACAATGGTCAAGGCCATTGCCAAAGCATTTCCACAATTGAAGTGCATTGTGTTTGATCAACCACATGTTGTTGCTAACTTGGAGGTTGGTGAGAACTTGGAGATTGTTGGAGGCAATATATTTGAAGCAATTCCTCCAGCAGATGCAATCTTACTAAAGTGGATACTACATGACTGGAGTGACGAAGAATGTGTGAAGATACTGAAGAAGTGCAAAGGGGCGATTCCAAATAAGGGAGGAAAGGTGATAATCATAGACATGGTAGTGGAGAGCAACAAAGGGGATAATAAGGCGGTGGAAACACAACTCTTCATAGACATGCTTATGATGGTGGTAGTTGCAGGGAAAGAGAGAAATGAGAAAGAATGGGAGAAGCTATTCTTGGCTGCAGGCTTCACTCACTATAAGATAACTCCAGCATTGGGTTTAAGGTCCCTCATTGAGGTTTACCCATGA 1074 0.4469 MECLGSRERATELLQAQVHTWKHTTNFVNSMVLKCAIQLGIPDVIHSHGQPMALSQLITALSLEPTKAPCLYRLMRVLVHSGFFAQQKLLHNSEEEEGYSLTFASQFLLKDEPVSGVPFLLLQLDPILTAPWHFLGDWFQNEDPTPFHTAHRKSFWDYAVHEPKLNDIFNETMVSDSRLIANMIVRQYKEVFEGLASLVDVGGGTGTMVKAIAKAFPQLKCIVFDQPHVVANLEVGENLEIVGGNIFEAIPPADAILLKWILHDWSDEECVKILKKCKGAIPNKGGKVIIIDMVVESNKGDNKAVETQLFIDMLMMVVVAGKERNEKEWEKLFLAAGFTHYKITPALGLRSLIEVYP* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0271 357 PANTHER O-METHYLTRANSFERASE 13 342 IPR016461 GO:0008168
Vvi12g0271 357 SUPERFAMILY "Winged helix" DNA-binding domain 11 113 IPR036390 -
Vvi12g0271 357 FunFam O-methyltransferase ZRP4 110 357 - -
Vvi12g0271 357 PIRSF O-mtase 2 357 IPR016461 GO:0008168
Vvi12g0271 357 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Vvi12g0271 357 Pfam O-methyltransferase domain 132 338 IPR001077 GO:0008171
Vvi12g0271 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 356 IPR029063 -
Vvi12g0271 357 FunFam Coniferyl alcohol 9-O-methyltransferase 4 108 - -
Vvi12g0271 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 357 IPR016461 GO:0008168
Vvi12g0271 357 Gene3D Vaccinia Virus protein VP39 109 357 IPR029063 -
Vvi12g0271 357 Gene3D - 5 108 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0271 Vvi-Chr12 3657308 3658646 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0271 31 343 Monolignol Biosynthesis Gene Families AT5G54160 35.647 2.64e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0271 - K16040 vvi:100242033 725.702