Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0270 ATGGATGTGGGTAGTGGAAAGAGAGCTAGTCTGCTGCTTCAAGCACAAGCTCATGTATGGAATCATACAATGAACTTCGTAAACTCCATGGCACTGAAATGTGCAGTTCGACTGGGCATTCCAGATGCCATCAACAACCATGGCCAACCCATTACTCTTTCTGAACTGGTCACTGCCTTGTCAATCAATCCAATAAAAGCTCCTTGCCTCCATCGTCTTATGCGCGTTCTCGTTCATTCTGGCTTCTTTGCTCAACAACAGGCCGACCACAATGAGCAAGAACAACTGTATTCGCTAACTTATGCATCTCGGTTCCTGCTAAAAGATGAGCCAACCAGTGGAGCGCCGCTCTTGCTTGTTCAAGTTGATCCGCATTTAACAAACCCCTGCCATTTCTTGAGTGATTGGTTCCGAAATAGTGATCCCACCCCATTCGTTACTGCATATGGGAAGCCATTTTGGGATTATGCAGCTCATGAACCAAAGTTTAACAATTTCTTTAATGAGGCCATGGCAAGTGACTCCCAGCTGATAGCCAGTGTGGTGGTTGGAGAGTGTAAGGAGGTATTCCGAGGGTTGAGCTCCTTGATTGATGTTGGGGGCGGCACCGGAACAATGGCCAAGGTCATTGCCAAAGCATTTCCACACTTGAAGTGTACTGTGTTTGATCAACCGCATGTGGTTGCAAACTTGCAGGGTGGTGAGAACTTGGAGTTTGTTGGAGGGGATATATTTGAGGCAATTCCTCCTGCAGATGCAATCTTACTTAAGTCGATTTTACACAACTGGAGTGACGGAGAATGTGTGAAGATACTGAAGAAATGCAAAGAAGCAATACATCCAAGAAAGGACAAGGGAGGGAAGGTGATAATCATAGACATAGTAATGGAAAACAACAAGGGAGATGAGGCAGTAGAAGCACAGCTCTTTTACGACATACTTATGATGGTTGTGGTTGCAGGCAAAGAGAGAAATGAGAGAGAATGGGAGAATCTCTTCCTGGCTGCAGGCTTCGCGCACTATAAGATAACCTCGACTTTGGGTCCAAGGTCCCTCATTGAGGTTTATCCTTGA 1074 0.4581 MDVGSGKRASLLLQAQAHVWNHTMNFVNSMALKCAVRLGIPDAINNHGQPITLSELVTALSINPIKAPCLHRLMRVLVHSGFFAQQQADHNEQEQLYSLTYASRFLLKDEPTSGAPLLLVQVDPHLTNPCHFLSDWFRNSDPTPFVTAYGKPFWDYAAHEPKFNNFFNEAMASDSQLIASVVVGECKEVFRGLSSLIDVGGGTGTMAKVIAKAFPHLKCTVFDQPHVVANLQGGENLEFVGGDIFEAIPPADAILLKSILHNWSDGECVKILKKCKEAIHPRKDKGGKVIIIDIVMENNKGDEAVEAQLFYDILMMVVVAGKERNEREWENLFLAAGFAHYKITSTLGPRSLIEVYP* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0270 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 357 IPR016461 GO:0008168
Vvi12g0270 357 FunFam O-methyltransferase ZRP4 108 357 - -
Vvi12g0270 357 Gene3D Vaccinia Virus protein VP39 107 357 IPR029063 -
Vvi12g0270 357 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
Vvi12g0270 357 CDD AdoMet_MTases 196 296 - -
Vvi12g0270 357 PANTHER O-METHYLTRANSFERASE 13 342 IPR016461 GO:0008168
Vvi12g0270 357 Pfam O-methyltransferase domain 133 339 IPR001077 GO:0008171
Vvi12g0270 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 356 IPR029063 -
Vvi12g0270 357 Gene3D - 4 106 IPR036388 -
Vvi12g0270 357 FunFam Coniferyl alcohol 9-O-methyltransferase 3 106 - -
Vvi12g0270 357 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Vvi12g0270 357 PIRSF O-mtase 2 357 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0270 Vvi-Chr12 3649392 3650615 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0270 30 355 Monolignol Biosynthesis Gene Families AT5G54160 33.133 7.44e-51 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0270 - K16040 vvi:100264316 721.465