Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0269 ATGGCTTTGGCAGTTGGTGAGACATCGACTGAGCTACTTCATGCTCATGCTCATGTCTGGAATCATATATTCAACTTCATAAACTCCATGTCACTGAAATGTGCTATTGAACTAGGCATCCCAGACATCATCCACAACCATGGGAAGCCCATGACTCTTTCTGAGCTGGTTGCTGAGCTCCCAGTCAACCCAGAGAAGACGAAATGCGTGTACCGTCTCATGCGCCTTCTTGTTCAGTCTGGCTTCTTTACCAGGAAAAGAGTCCAAGAAAGCGGGCAAGAAGAGGGGTATGTGCTTACACATGCCTCTAGGCTCCTCCTAAAGGACGACCCCTTGAGTGCAAGGCCCTTCTTGCTTGCCATGCTCGACCCAGTTTTAATTACACCATGGCAATATGTGAGTGCTTGGTTTCAAAATGATGATCCCACTCCATTCGACACTGCTCATGGGCGGACATTTTGGGATTATGCTGGCCATGAACCCAAGCTCAACAATTTCTTCAATGAAGCCATGGCTAGTGATGCTCGCTTAGTAACCAGCGTGCTGATTAAGGACTGCAAGGGCATATTTGTGGGGTTGAATTCATTAGTTGATGTAGGGGGTGGCACAGGGACAGTGGCTAGGGCCATTGCCAATGCTTTCCCACACTTGAACTGCACCGTGTTAGATCTCCCCCATGTGGTTGCTGGCTTGGAAGGGAGTAAGAACTTGAACTACCTTGCAGGGGATATGTTTGAAGCAATTCCTCCTGCAGATGCTATTTTACTCAAGCAGTGGATATTGCATGACTGGAACCATGACGAATGTGTGAAGATACTCAAGCGATGCAGAGATGCGATTCCCAGCAAGGAAAAAGGAGGAAAGGTGATAATCATAGACATGATGATGGAGAACCAGAAAGCAGATGATGAGTCCATCGAAACACAACTCTTTTGGGATATGCTGATGATGATTGTGCTAACGGGCCAAGAGAGGAACATTAAAGACTGGGAGAAGCTCTTCTTTGATGCTGGTTTCAGTGGCTATAAGATAACTCCCATGCTGGGTTTAAGGTCTCTCATCGAGGTTTACCCATGA 1077 0.4698 MALAVGETSTELLHAHAHVWNHIFNFINSMSLKCAIELGIPDIIHNHGKPMTLSELVAELPVNPEKTKCVYRLMRLLVQSGFFTRKRVQESGQEEGYVLTHASRLLLKDDPLSARPFLLAMLDPVLITPWQYVSAWFQNDDPTPFDTAHGRTFWDYAGHEPKLNNFFNEAMASDARLVTSVLIKDCKGIFVGLNSLVDVGGGTGTVARAIANAFPHLNCTVLDLPHVVAGLEGSKNLNYLAGDMFEAIPPADAILLKQWILHDWNHDECVKILKRCRDAIPSKEKGGKVIIIDMMMENQKADDESIETQLFWDMLMMIVLTGQERNIKDWEKLFFDAGFSGYKITPMLGLRSLIEVYP* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0269 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 358 IPR016461 GO:0008168
Vvi12g0269 358 FunFam O-methyltransferase ZRP4 108 358 - -
Vvi12g0269 358 CDD AdoMet_MTases 196 292 - -
Vvi12g0269 358 SUPERFAMILY "Winged helix" DNA-binding domain 8 111 IPR036390 -
Vvi12g0269 358 PIRSF O-mtase 2 358 IPR016461 GO:0008168
Vvi12g0269 358 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Vvi12g0269 358 Gene3D - 3 106 IPR036388 -
Vvi12g0269 358 Gene3D Vaccinia Virus protein VP39 107 358 IPR029063 -
Vvi12g0269 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 110 357 IPR029063 -
Vvi12g0269 358 FunFam Coniferyl alcohol 9-O-methyltransferase 3 106 - -
Vvi12g0269 358 Pfam O-methyltransferase domain 130 340 IPR001077 GO:0008171
Vvi12g0269 358 PANTHER O-METHYLTRANSFERASE 15 343 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0269 Vvi-Chr12 3645774 3647115 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0269 30 344 Monolignol Biosynthesis Gene Families AT5G54160 33.125 6.24e-53 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0269 - K16040 vvi:100259140 729.554