Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0264 ATGGATTTCGCAAACGGTGAGATATCAGCTGAGCTGCTTCATGCTCAAGCTCATGTCTGGAACCATATATTAAACTTCATAAAGTCCGTGTCACTAAAATGTGCCATTCAACTAGGCATCCCAGACATCATCCACAACCATGGCAAGCCCATGACTCTTCCTGAGCTGGTTGCTAAGCTCCCAGTCCACCCTAAAAGGAGTCAGTGCGTGTACCGTCTCATGCGCATTCTCGTTCATTCTGGCTTCCTTGCTGCGCAAAGTGTCCAACAAGGTGAGGAAGAAGAGGGGTATGTGCTTACAGATGCCTCTAGGCTCCTTCTAATGGATGACTCCTTGAGCATAAGGCCCTTGTTGCTTGCCATGCTCGACCCAATTTTAACTAAACCATGGCATTATCTGAGTGCTTGGTTTCAAAATGATGATCCTACTCCGTTCCACACTGCTCATGAGCGGCCATTTTGGGATTATGCCGGCCATGAACCTCAGCTCAACAATTTCTTCAATGAAGCCATGGCTAGCGATGCTCGCTTAGTCACCAGCGTGCTGCTTAAGGAGGGCAAGGGCGTATTTGAGGGGCTGAACTCATTAGTTGATGTAGGGGGTGGCACCGGACAAGTGGCCAAGGCCATTGCTAACGCTTTCCCACATTTGAACTGCACCGTGTTAGATCTCCCCCACGTGGTTGCTGGCTTGCAAGGGAGCAAGAACTTGAACTACTTTGCAGGTGATATCTTTGAGGCAATTCCTCCTGCAGATGCAATTTTACTCAAGCAGTGGATATTACATGACTGGAACGATGAAGAATGTGTCAAGATACTACAGCAATGCAGACAGGCGATTCCAAGCAAGGAGAAGGGAGGCAAGGTGATAATAATAGACATGATGATGGAGAACCAGAAAGGAGATGATGAGTCCATGGAAACACAGCTCTTTTTTGATATGCTGATGATGATTTTAGTCACGGGTCAAGAGAGGAACGAAAAAGAATGGGAGAAGCTGTTCTTGGATGCTGGTTTCAGTGGCTATAAGATAACCCCCATACTGGGTTTAAGGTCTCTTATTGAAGTTTATCCTTGA 1077 0.468 MDFANGEISAELLHAQAHVWNHILNFIKSVSLKCAIQLGIPDIIHNHGKPMTLPELVAKLPVHPKRSQCVYRLMRILVHSGFLAAQSVQQGEEEEGYVLTDASRLLLMDDSLSIRPLLLAMLDPILTKPWHYLSAWFQNDDPTPFHTAHERPFWDYAGHEPQLNNFFNEAMASDARLVTSVLLKEGKGVFEGLNSLVDVGGGTGQVAKAIANAFPHLNCTVLDLPHVVAGLQGSKNLNYFAGDIFEAIPPADAILLKQWILHDWNDEECVKILQQCRQAIPSKEKGGKVIIIDMMMENQKGDDESMETQLFFDMLMMILVTGQERNEKEWEKLFLDAGFSGYKITPILGLRSLIEVYP* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0264 358 Pfam O-methyltransferase domain 130 340 IPR001077 GO:0008171
Vvi12g0264 358 CDD AdoMet_MTases 196 292 - -
Vvi12g0264 358 PIRSF O-mtase 2 358 IPR016461 GO:0008168
Vvi12g0264 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 357 IPR029063 -
Vvi12g0264 358 Gene3D - 3 106 IPR036388 -
Vvi12g0264 358 Pfam Dimerisation domain 31 78 IPR012967 GO:0046983
Vvi12g0264 358 SUPERFAMILY "Winged helix" DNA-binding domain 8 110 IPR036390 -
Vvi12g0264 358 PANTHER O-METHYLTRANSFERASE 13 343 IPR016461 GO:0008168
Vvi12g0264 358 FunFam Coniferyl alcohol 9-O-methyltransferase 3 106 - -
Vvi12g0264 358 Gene3D Vaccinia Virus protein VP39 108 358 IPR029063 -
Vvi12g0264 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 358 IPR016461 GO:0008168
Vvi12g0264 358 FunFam O-methyltransferase ZRP4 108 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0264 Vvi-Chr12 3580108 3638237 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0264 30 344 Monolignol Biosynthesis Gene Families AT5G54160 33.125 2.50e-52 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0264 - K16040 vvi:100260877 685.256