Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0263 ATGGATTTGGCAAATGGTGAGAGATCTAGTGAGCTGCTTCAAGCTCAAGCTCACGTTTGGAACCACATATTCAACTTCATAAATTCCATGTCACTGAAATGTGCTATTCAACTTGGCATCCCAGACATCATTCACAACCATTGTAAGCCCATGACTCTTCATGAGCTGGTTGCTAAGCTCCCTGTCCGTCCGAATAAGACACTCTGCGTTCATCGCCTCATGCGCATTCTTGTTCATTCTGGATTCTTTACCAAGCAAAGAGTCCAAGAAAGTGCGGACGAAGAGGGTTACGTACTTGCAAATGCTTCTAGGCTCCTCCTGAAGGACCATCCTTTGAGCATAACACCCTTCTTGCTACTGCTCGACCCAGATTTAACGGAACCATGGGATTATGCAAGTGCTTGGTTTCAAAATGATGATCCCACCCCGTTTTTCACTGCCCATGGGCGGACACTTTGGGATTATGGTTGCCATGAACCGAGGTTTAACAACTTCTTCAACGAGGGCATGGCCAGTGATGCTCGCTTGGTCACCAGCGTGCTGGTTAAGGAGTGCAAGGGCGCTTTTGAGGGGTTGAACTCGTTTGTTGATGTTGGCGGTGGTACGGGAACAGTGGCTAAGACCATTGTCGAGGCGTTCCCACACTTGCACGGCACTGTGCTTGATCTCCCGCACGTGGTTGCTGACTTGCGAGGAAGCAAAAACTTGACCTACCTCGCAGGGGATCTGTTCGAAGCAATTCCTCCTGCAGATGCCATTTTACTCAAGTGGATATTGCATGACTGGAGCGATGAAGAATGCCTGAAAATACTCAAGCAATGCAGAGAGGCAATTCCAAGCAAAGAAAAGGGAGGAAAGGTGATGATCATAGACATGGCGATTCAAAACAAGAAAGGAGATGACGATGAGTCCAATGTGGAGACACAACTCTTCTTCGATATGCTGATGATGGTTTTGCTCCCGGGTCGAGAGAGGGAGGAGAAAGAATGGAAGAAGCTGTTCCTGGATTCTGGTTTCAGTGGCTATAAGATAACGCCCATATTGGGTTTAAGGTCTCTTATTGAGGTTTATCCTTGA 1077 0.4745 MDLANGERSSELLQAQAHVWNHIFNFINSMSLKCAIQLGIPDIIHNHCKPMTLHELVAKLPVRPNKTLCVHRLMRILVHSGFFTKQRVQESADEEGYVLANASRLLLKDHPLSITPFLLLLDPDLTEPWDYASAWFQNDDPTPFFTAHGRTLWDYGCHEPRFNNFFNEGMASDARLVTSVLVKECKGAFEGLNSFVDVGGGTGTVAKTIVEAFPHLHGTVLDLPHVVADLRGSKNLTYLAGDLFEAIPPADAILLKWILHDWSDEECLKILKQCREAIPSKEKGGKVMIIDMAIQNKKGDDDESNVETQLFFDMLMMVLLPGREREEKEWKKLFLDSGFSGYKITPILGLRSLIEVYP* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0263 358 FunFam O-methyltransferase ZRP4 108 358 - -
Vvi12g0263 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 110 357 IPR029063 -
Vvi12g0263 358 CDD AdoMet_MTases 195 290 - -
Vvi12g0263 358 Pfam O-methyltransferase domain 129 340 IPR001077 GO:0008171
Vvi12g0263 358 Gene3D Vaccinia Virus protein VP39 109 358 IPR029063 -
Vvi12g0263 358 Gene3D - 2 106 IPR036388 -
Vvi12g0263 358 PANTHER O-METHYLTRANSFERASE 11 343 IPR016461 GO:0008168
Vvi12g0263 358 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Vvi12g0263 358 FunFam Coniferyl alcohol 9-O-methyltransferase 2 106 - -
Vvi12g0263 358 SUPERFAMILY "Winged helix" DNA-binding domain 8 111 IPR036390 -
Vvi12g0263 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 358 IPR016461 GO:0008168
Vvi12g0263 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0263 Vvi-Chr12 3564082 3565358 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0263 30 345 Monolignol Biosynthesis Gene Families AT5G54160 34.783 1.18e-56 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0263 - K16040 vvi:100255808 734.176