Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0260 ATGGATTTGGCAAATGGTGGGAGATCTAGTGAGCTGCTTCAAGCTCAAACTCACGTTTGGAACCACATATTCAACTTCATAAATTCCATGTCACTGAAATGTGCTATTCAACTTGGCATCCCCGACATCATTCACAACCATTGTCAGCCCATGACTCTTCATGAGCTGGTTGCTAAGCTCCCTGTCCGTCCGAATAAGACACTGTGCGTTCATCGCCTCATGCGAATTCTTGTTCATTCTGGATTCTTTACTATGCAAAGAGTCCAAGAAAGTGCGGACGAAGAGGGTTATGTACTTGCAAATGCTTCTAGGCTCCTCCTGAAGGACCATCCTTTGAGCGTAACACCCTTCTTGCTTGCCATGCTCGACCCAGATTTAACGGAACCATGGCATTATGTAAGTGCTTGGTTTCAAAACGATGATCCCACCCCGTTTTTCACTGCCCATGGGCGGACAATTTGGGATTATGGTTGCCATGAACCGAGGTTTAACAACTTCTTCAACGAGGCCATGGCCAGTGATGCTCGCTTGGTCACCAGCGTGCTGGTTAAGGAGTGCAAGGGCGCTTTTGAGGGGCTGAACTCGTTTGTTGATGTTGGCGGTGGTACGGGAACAGTGGCTAAGACCATTGTCGAGGCGTTCCCACACTTGCACAGCACTGTGCTTGATCTCCCGCACGTGGTTGCTGACTTGCAAGGGGGCAAAAGCTTGACCTACCTCGCAGGGGATATGTTCGAGGCAATTCCTCCTGCGGATGCCATTTTACTGAAGTGGATATTGCATGACTGGAGCGATGAAGAATGCCTGAAAATACTCAAGCAATGCAGAGAGGCAATTCCAAGCAAAGAAAAGGGAGGAAAGGTGATGATCATAGACATGGCGATTCAAAACAAGAAAGGAGATGACGATGAGTCCAATGTGGAGACACAACTCTTCTTCGATATGCTGATGATGGTTTTGCTCCCGGGTCGAGAGAGGGAGGAGAAAGAATGGAAGAAGCTGTTCCTGGATTCTGGTTTCAGTGGCTATAAGATAACGCCCATATTGGGTTTAAGGTCTCTTATTGAGGTTTATCCTTGA 1080 0.4769 MDLANGGRSSELLQAQTHVWNHIFNFINSMSLKCAIQLGIPDIIHNHCQPMTLHELVAKLPVRPNKTLCVHRLMRILVHSGFFTMQRVQESADEEGYVLANASRLLLKDHPLSVTPFLLAMLDPDLTEPWHYVSAWFQNDDPTPFFTAHGRTIWDYGCHEPRFNNFFNEAMASDARLVTSVLVKECKGAFEGLNSFVDVGGGTGTVAKTIVEAFPHLHSTVLDLPHVVADLQGGKSLTYLAGDMFEAIPPADAILLKWILHDWSDEECLKILKQCREAIPSKEKGGKVMIIDMAIQNKKGDDDESNVETQLFFDMLMMVLLPGREREEKEWKKLFLDSGFSGYKITPILGLRSLIEVYP* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0260 359 FunFam Coniferyl alcohol 9-O-methyltransferase 3 106 - -
Vvi12g0260 359 Gene3D - 3 106 IPR036388 -
Vvi12g0260 359 PIRSF O-mtase 2 359 IPR016461 GO:0008168
Vvi12g0260 359 Gene3D Vaccinia Virus protein VP39 107 359 IPR029063 -
Vvi12g0260 359 Pfam O-methyltransferase domain 130 341 IPR001077 GO:0008171
Vvi12g0260 359 CDD AdoMet_MTases 196 291 - -
Vvi12g0260 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 359 IPR016461 GO:0008168
Vvi12g0260 359 FunFam O-methyltransferase ZRP4 108 359 - -
Vvi12g0260 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 358 IPR029063 -
Vvi12g0260 359 SUPERFAMILY "Winged helix" DNA-binding domain 9 111 IPR036390 -
Vvi12g0260 359 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Vvi12g0260 359 PANTHER O-METHYLTRANSFERASE 11 344 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0260 Vvi-Chr12 3496756 3498036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0260 30 345 Monolignol Biosynthesis Gene Families AT5G54160 34.579 2.23e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0260 - K16040 vvi:100250627 740.339