Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0259 ATGGTTAGTGATGCTCGCTTAGTCACTAGCGTGCTGGTTAAGGAGGGAAAGGGCGTATTTGAGGGATTGAACTCATTAGTTGATGTCGGGGGCTGCACGGGAACTATGGCTAAGGTCATTGCTAACGCTTTCCCATACTTGAACTGCACCGTGTTAGATCTCCCCCGTGTAGTTGCTGGCTTGCAAGGGAGCAAGAACTTGAACTACTCCGCAGGGGATATGTTTGAGGCAATTCCTCTCGCAGATGCAAGTTTACTCAAGTGGATATTGCATGACTGGAGCGATGTAGGGAAGCAATTCCTAGCAAGGAAAAGGGAGGAAAGGTGGTCTGTGAAAAACCGGATCGGGTTCGGGGGCCAGGTTACTTATCAGGAAGGTACGGTAAAAACCGTAGCACTCTTCTAA 405 0.4914 MVSDARLVTSVLVKEGKGVFEGLNSLVDVGGCTGTMAKVIANAFPYLNCTVLDLPRVVAGLQGSKNLNYSAGDMFEAIPLADASLLKWILHDWSDVGKQFLARKREERWSVKNRIGFGGQVTYQEGTVKTVALF* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0259 134 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 134 IPR016461 GO:0008168
Vvi12g0259 134 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 4 97 IPR029063 -
Vvi12g0259 134 PANTHER O-METHYLTRANSFERASE 1 103 IPR016461 GO:0008168
Vvi12g0259 134 Gene3D Vaccinia Virus protein VP39 1 106 IPR029063 -
Vvi12g0259 134 Pfam O-methyltransferase domain 3 101 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0259 Vvi-Chr12 3483457 3486343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0259 2 95 Monolignol Biosynthesis Gene Families AT5G54160 40.426 5.07e-18 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0259 - K16040 vvi:100263651 173.711