Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0254 ATGGCCGGTCCACTGCTTCGCTCTCTTTGGTCGACCACCAGGAAGTCTCTCTCCTCCTCTTCCCCGTCGGCCCCTCTCAGGCCATTCCTCTGTCCACGCCCTCATGCCTACACGCTTCCCCGCTGTTTCTCGGCGGTGGCGGGAGCTGCCGCAGCCGCCGCTCCAGGAAGCTCCCTGGACCCCAACCGGCTCCGGAACGTGGCCGTGATTGCACATGTGGATCATGGGAAGACCACCCTGATGGACCGGCTCCTCCGGCAGTGTGGCGCCGACATCCCCCACGAGCGCGCCCTCGACTCCATCAGTCTCGAGCGCGAGCGCGGCATCACCATTGCTTCCAAGGTTACGGCCATTTTGTGGAAGGAAAACGAACTAAATATGGTTGATACACCCGGCCATGCGGACTTTGGTGGTGAAGTTGAGCGGGTTGTTGGCATGGTTGAAGGAGCAGTTTTAGTTGTAGATGCTGGTGAAGGTCCCCTTGCACAAACAAAGTTTGTCCTTGCAAAAGCCTTAAAATATGGATTACGCCCTATTCTTCTTCTAAACAAAGTAGACCGTCCTGCAGTTACTGAGGAGAGGTGTGATGAAGTTGAGAGTCTAGTCTTTGATCTTTTTGCAAATCTTGGTGCTACAGAGGAGCAGCTGGATTTTCCAGTTCTCTATGCTTCTGCCAAAGAAGGATGGGCTTCCTCCACCTTCACTAAAAGTCCTCCTGATAATACCAAGAGCATGTCAGAGTTGCTTGATGCAATCATAAGACATGTTCCTCCACCAACAGCAAGCCTTGATGCACCTTTTCAAATGCTGGTTTCCATGATGGAAAAAGATTTTTATCTTGGGCGAATATTGACTGGACGTGTTTCTTCTGGTGTTATCCGTGTTGGGGACAGAGTACATGGACTTCGTAGCACAGATTCTGGAGTGGAGAAAATTGAAGAGGGAAAGGTTCTGAAACTAATGAAAAAGAAGGGTACAAACATGGTTTTAATTGATAGTGCAGGAGCTGGTGATATAATATCAATGGCTGGGTTGACAAGTCCATCTATTGGACATACAGTGGCGAATGTGGAGGTTATGACTGCACTGCCCACTGTTGAGTTGGATCCCCCAACCATTTCCATGACCTTTAGTGTCAATGACTCTCCACTGGCTGGTCGTGATGGCACCCATTTAACTGGTGGAAAAATTGGTGACCGATTAATGGCGGAAGCAGAAACAAATCTAGCCATAAATGTGCTCCCAGGATTATCAGAATCATATGAAGTTCAGGGGAGGGGAGAGCTTCAACTGGGTATCTTAATTGAGAATATGAGGCGTGAAGGATTTGAGCTCTCCGTCTCACCACCTAAAGTCATGTATAAGACTGAGAAGGGTGTCAAGTTTGAGCCATTGGAAGAAGTGACTATTGAGGTCAATGAGGAGCATGTTGGGTTAGTCATGGAGGCACTCTCTCATAGGCGAGCTGAGGTTGTTGACATGGGCCCTGTTGCAGGAAGTGAGGGCAGAACAAGAATATCCATGACTTGTCCATCAAGGGGCCTGGTTGGTTACAGGAGTGTGTTTAGCAGTGACACACGTGGCACTGGATTTATGCATCGTGCTTTCTTAACTTATGCTAAGTTTCGAGGTCCTCTTGGAAATGTCAGGAAAGGAGTATTGGTATCAATGGGTCACGGAACAATAACAGCATATGCGCTAGTGAGTTTAGAACCTCGCGGAACTCTCTTTGTAACTCCTGGCATGGAGACTTATGATGGCATGATTGTTGGTGAACATTCCCGGGATACAGATCTTGATATCAACCCAGTAAGGGCTAAGGAACTTACCAATATACGCGCTGCTTCCAAGGATGAGAATGTGAAGCTAACTCCTCCTCGTCTTATGACTCTTGAAGAGGCGATAGGGTATGTTGCTTCTGATGAGCTCATTGAAGTAAGTTCCACTTATTTTTTAAACTAG 1962 0.4827 MAGPLLRSLWSTTRKSLSSSSPSAPLRPFLCPRPHAYTLPRCFSAVAGAAAAAAPGSSLDPNRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERALDSISLERERGITIASKVTAILWKENELNMVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVTEERCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASSTFTKSPPDNTKSMSELLDAIIRHVPPPTASLDAPFQMLVSMMEKDFYLGRILTGRVSSGVIRVGDRVHGLRSTDSGVEKIEEGKVLKLMKKKGTNMVLIDSAGAGDIISMAGLTSPSIGHTVANVEVMTALPTVELDPPTISMTFSVNDSPLAGRDGTHLTGGKIGDRLMAEAETNLAINVLPGLSESYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTEKGVKFEPLEEVTIEVNEEHVGLVMEALSHRRAEVVDMGPVAGSEGRTRISMTCPSRGLVGYRSVFSSDTRGTGFMHRAFLTYAKFRGPLGNVRKGVLVSMGHGTITAYALVSLEPRGTLFVTPGMETYDGMIVGEHSRDTDLDINPVRAKELTNIRAASKDENVKLTPPRLMTLEEAIGYVASDELIEVSSTYFLN* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0254 653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 269 IPR027417 -
Vvi12g0254 653 FunFam GTP-binding protein TypA 549 635 - -
Vvi12g0254 653 Gene3D Elongation Factor G (Translational Gtpase), domain 3 372 647 - -
Vvi12g0254 653 Pfam Elongation factor G C-terminus 462 544 IPR000640 -
Vvi12g0254 653 Gene3D Translation factors 262 365 - -
Vvi12g0254 653 NCBIfam translational GTPase TypA/BipA 64 647 IPR006298 GO:0003924|GO:0005525
Vvi12g0254 653 CDD BipA_TypA_C 463 543 IPR035651 -
Vvi12g0254 653 CDD TypA_BipA 64 259 IPR047041 -
Vvi12g0254 653 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 62 260 IPR000795 GO:0003924|GO:0005525
Vvi12g0254 653 SUPERFAMILY EF-G C-terminal domain-like 463 579 IPR035647 -
Vvi12g0254 653 FunFam GTP-binding protein TypA 63 260 - -
Vvi12g0254 653 Gene3D - 62 260 IPR027417 -
Vvi12g0254 653 PRINTS GTP-binding elongation factor signature 66 79 IPR000795 GO:0003924|GO:0005525
Vvi12g0254 653 PRINTS GTP-binding elongation factor signature 106 114 IPR000795 GO:0003924|GO:0005525
Vvi12g0254 653 PRINTS GTP-binding elongation factor signature 126 136 IPR000795 GO:0003924|GO:0005525
Vvi12g0254 653 PRINTS GTP-binding elongation factor signature 178 187 IPR000795 GO:0003924|GO:0005525
Vvi12g0254 653 PRINTS GTP-binding elongation factor signature 142 153 IPR000795 GO:0003924|GO:0005525
Vvi12g0254 653 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 99 114 IPR031157 -
Vvi12g0254 653 Pfam Elongation factor Tu domain 2 281 354 IPR004161 GO:0005525
Vvi12g0254 653 CDD BipA_III 371 448 IPR047043 -
Vvi12g0254 653 FunFam GTP-binding protein TypA 372 481 - -
Vvi12g0254 653 Gene3D bipa protein 549 629 IPR042116 -
Vvi12g0254 653 CDD BipA_TypA_II 267 364 IPR047042 -
Vvi12g0254 653 SUPERFAMILY EF-G C-terminal domain-like 369 452 IPR035647 -
Vvi12g0254 653 Pfam Elongation factor Tu GTP binding domain 63 257 IPR000795 GO:0003924|GO:0005525
Vvi12g0254 653 Gene3D - 454 548 - -
Vvi12g0254 653 FunFam GTP-binding protein TypA 454 548 - -
Vvi12g0254 653 NCBIfam small GTP-binding protein domain 65 202 IPR005225 GO:0005525
Vvi12g0254 653 FunFam Elongation factor family protein 261 365 - -
Vvi12g0254 653 SUPERFAMILY Translation proteins 209 364 IPR009000 -
Vvi12g0254 653 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 61 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0254 Vvi-Chr12 3418260 3441211 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0254 63 187 Eukaryotic Initiation Factors Gene Family AT3G22980 41.221 2.14e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0254 K06207 - vvi:100247278 1215.68