Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0251 ATGCAGAGGGGCAATGGCAGTCCAGCAGCATGCGCAGCATGCAAGCATCAGAGGAAGAGGTGCGACGAAAACTGCGCCTTGTCTCCCTACTTCCCTGCCAGTAAAACCCGAGAATTCCAGGCGGTGCACAAGGTGTACGGGATGAGTAATGTTATAAAAATACTAAGGAGTATTGAGAGCGAAGACGAGCGGAGGAGGGCGGCTGATTCGCTTGTGTGGGAAGCGTTTTGCAGGCAAAGGAATCCTGTGTTGGGTTCGTATGGGGAGTTTAAGAAGGTGGTAGAAGAGCTTAAGTTTTACAAAAGCCAAAATCAACAGTTGCAAGAGGCTTACGCAAGGGCATCGGAGTTGATCGGGTGGAACAGATCTAGTAATGGGATGAACACCGCCGCTGCTGGCGCCAGTGGCTGCCGGAATAATGGATTGAATTACGTGAACAATAATCGGAATTCGAAGTTAGATTCGACTACTGCGTATGGTTATCCAAGGCAGGTCCAAATCCAAGAGGAAACAGAAAGAGATGCCGCTTCTGCAGTACTTGTGGTGCCCCAGCAACACTCCACCAATGGCTTCACACAGCAATACTGCTTTCCAGGTGAGTTGAGTTCAGTGAATGGTAGAACAATGGATAGTGTAATATGGGAAGGTGGATCATAG 657 0.4901 MQRGNGSPAACAACKHQRKRCDENCALSPYFPASKTREFQAVHKVYGMSNVIKILRSIESEDERRRAADSLVWEAFCRQRNPVLGSYGEFKKVVEELKFYKSQNQQLQEAYARASELIGWNRSSNGMNTAAAGASGCRNNGLNYVNNNRNSKLDSTTAYGYPRQVQIQEETERDAASAVLVVPQQHSTNGFTQQYCFPGELSSVNGRTMDSVIWEGGS* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0251 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 157 - -
Vvi12g0251 218 Coils Coil 90 117 - -
Vvi12g0251 218 ProSiteProfiles LOB domain profile. 9 111 IPR004883 -
Vvi12g0251 218 Pfam Lateral organ boundaries (LOB) domain 10 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0251 Vvi-Chr12 3392281 3393991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0251 10 121 AS2 family AT1G06280 57.143 2.21e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi12g0251 LOB 1.3e-31 No_clan