Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0250 ATGGAGCCAAGTCTTTGTTTCTTCTTGATTGCTCTCATCTCCGCTTTCTTCCTCATCACCTATTCTTCGGCTTTACCTATACTTGGAATTCACCCGCTAGATGAGAAGTACTATGCCTCACAGGCGATCAAGTGCAAGGATGGGTCGAAGTTCTTTAACAAAGCCCGAATCAATGACAATTTCTGTGACTGCATTGATGGAACGGATGAGCCTGGAACATCGGCTTGCCCTGCTGGAAAATTTTATTGTAAGAATGTGGGAAGTACACCAAAGTTTTTGTTTTCTTCTCAAGTGAATGACCATTTTTGTGATTGCTGCGATGGGAGTGATGAGTACAGTGGTAGCATCAATTGTCCCAACACATGTGTCATGGGTGGGGATGTTGAATACCAGACTAAAAGTCATGTCTCAGCGATCGGTGAAGTGGATCCTATTGATGTGAAAGAAGCTAAGACTAAGCTTAATTTAGAGGATCAGATTCATAAACTTACAGGGTTGAAGATAGTGATAATTCTACAGGTGGTTCTTATTGGTTGCGTGCTGGGTTTTTGCCTCTTCCGTCGACGTGCCAGGTCTAGAAGGCGTTATCTTTTTTCATGTTTGATAAAAATGTTATAA 618 0.4191 MEPSLCFFLIALISAFFLITYSSALPILGIHPLDEKYYASQAIKCKDGSKFFNKARINDNFCDCIDGTDEPGTSACPAGKFYCKNVGSTPKFLFSSQVNDHFCDCCDGSDEYSGSINCPNTCVMGGDVEYQTKSHVSAIGEVDPIDVKEAKTKLNLEDQIHKLTGLKIVIILQVVLIGCVLGFCLFRRRARSRRRYLFSCLIKML* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0250 205 Pfam Glucosidase II beta subunit-like 18 124 IPR028146 -
Vvi12g0250 205 Gene3D - 72 123 IPR036055 GO:0005515
Vvi12g0250 205 PANTHER N-LINKED OLIGOSACCHARIDE PROCESSING 10 134 IPR039794 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0250 Vvi-Chr12 3379784 3383145 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0250 26 126 Calmodulin-binding Proteins AT5G56360 69.608 2.80e-48 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0250 - - vvi:100264427 382.104