Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0247 ATGGCGCAACTGCCTCCAAAGGTCCCAGCCATGGCTGCCAACTGGCCTAGTTTTCCTCACCAGAAGATCCCTTCCATGGGGAACTTGGCGCCTCCCGCCACGCAGAACCCCTCCTGGGTCGATGAATTCCTCGACTTCTCCTCCGCCAAGCGGGGCACTCACCGGAGATCCGTCAGCGACTCCATTGCCTTCTTCGAGGCCCCGGACGATTGCCGCAACTCGGGGGCGGCCCCCCGGCCGCCGGGGGCTGGCAATGAGTTTGATCAATTCGACGACGAGCAGTTCATGTCCATGTTCACCGACGCCATGGCCCCCACCATCTCCTCCTCCAACCCCTCCACGCCTTCCGACCATTACAGCTTTAATGAAGAGAAAACTACAACAATTGAGCAGCAACAGCAGCAGCAGCAGCTCAAGAACGAATCGGAGGAGGTGCAAAGCTCTTGCAAATTGGAGTCACAAACCCCACCACAACCTTCAATGACCACCTCCAATGATCGGATCGTAGACCCCAAAAGAGTGAAAAGAATTCTGGCAAACAGGCAATCCGCGCAAAGATCACGAGTTAGGAAGCTACAATACATATCAGAGCTGGAACGCAGCGTCACCTCATTACAAACCGAAGTCTCGGTGTTGTCGCCGCGGGTGGCGTTTCTGGACCATCAGCGGTTGCTTCTAAACGTCGACAACAGCGCTCTCAAGCAAAGAATCGCGGCTCTGGCTCAAGATAAGATTTTCAAAGATGCCCATCAAGATGCGTTGAAGAGGGAAATAGAGAGACTAAGGCAAGTCTATCACCAGCAGAACCTCAAGACTACGGAGAACGCGGCGCCACCCACGGCCTCCGATGTTAAGGATTTTAAGGAGGAGGATGTTCTAAACCATTGA 888 0.5439 MAQLPPKVPAMAANWPSFPHQKIPSMGNLAPPATQNPSWVDEFLDFSSAKRGTHRRSVSDSIAFFEAPDDCRNSGAAPRPPGAGNEFDQFDDEQFMSMFTDAMAPTISSSNPSTPSDHYSFNEEKTTTIEQQQQQQQLKNESEEVQSSCKLESQTPPQPSMTTSNDRIVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQDALKREIERLRQVYHQQNLKTTENAAPPTASDVKDFKEEDVLNH* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0247 295 SUPERFAMILY Leucine zipper domain 172 226 IPR046347 GO:0003700|GO:0006355
Vvi12g0247 295 Pfam bZIP transcription factor 172 216 IPR004827 GO:0003700|GO:0006355
Vvi12g0247 295 MobiDBLite consensus disorder prediction 104 169 - -
Vvi12g0247 295 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 170 222 IPR004827 GO:0003700|GO:0006355
Vvi12g0247 295 SMART brlzneu 168 232 IPR004827 GO:0003700|GO:0006355
Vvi12g0247 295 Coils Coil 251 271 - -
Vvi12g0247 295 MobiDBLite consensus disorder prediction 269 295 - -
Vvi12g0247 295 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 175 190 IPR004827 GO:0003700|GO:0006355
Vvi12g0247 295 FunFam Basic leucine zipper 61 171 244 - -
Vvi12g0247 295 CDD bZIP_plant_RF2 173 223 IPR044759 GO:0003700|GO:0006355
Vvi12g0247 295 MobiDBLite consensus disorder prediction 68 89 - -
Vvi12g0247 295 Gene3D - 171 270 - -
Vvi12g0247 295 MobiDBLite consensus disorder prediction 104 167 - -
Vvi12g0247 295 PANTHER BASIC LEUCINE ZIPPER 34 1 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0247 Vvi-Chr12 3366293 3367561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0247 1 250 bZIP Transcription Factor Family AT3G58120 58.362 2.12e-98 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi12g0247 bZIP_1 5.2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0247 - - vvi:100243740 562.762