Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi12g0241 | ATGAGTTTCCCTTTTCCTCCTATGCCATACAGTACGCCGTTGAGCAGTGATGATGATGATGATAATGGTAGCTACACTACTTCTCACAAAAGCTCGTCTGATCTAAACAGCAAGATCATGCTCACTGCAATCGTTTCATTATCGGTGGTGATCGCGCTTGTTATCACACTTCACATCTACGCTAGATGTGTCCTGAGGCGGCGGGCGCGGCGGCGGTCGGCCTTGCTCAGCATAACTCTCTCCCGAGTGCACTCCGATGAGCCACCCAAGACCGGGCTGGATCAATCCGTTATCGACTCTCTACCGATGTTCAAGTTCAGCGAGAATGATACCCAGGAGGAGGGTGGGACGACCGACTGTGCGGTATGCTTGAGTGTCCTAGAGGAAGGAGAGATTGCCCGGCTTCTACCCAACTGCAAGCACACTTTCCATGCAGAGTGCATAGATAAATGGTTGGGCACACACTCAACGTGCCCCATCTGCCGCACGGAGGCTGAGCCCCGCCTGCAGCCCGAGCCCCGTGAGGCTATGGTCATGATCAGGACTGTTCCCCCCGCACCCGCGCCTCCTTCAGATGGAACTAACTCATCGTCCTTGGCATGCTCGGAAGGGACATCAGAGGGTGCGGCGCAATGCTCGGCTAAGTCTGGTGCATCGACTTCTCGGTTGAGTTCATTCAGGAGGATGCTTAGTAGGGGATCATCAAGGACAACTCAATCCTGTGGTGCCCCAGAAGATGGTATAGAAGATGTTGAGAGGCGATGA | 765 | 0.5412 | MSFPFPPMPYSTPLSSDDDDDNGSYTTSHKSSSDLNSKIMLTAIVSLSVVIALVITLHIYARCVLRRRARRRSALLSITLSRVHSDEPPKTGLDQSVIDSLPMFKFSENDTQEEGGTTDCAVCLSVLEEGEIARLLPNCKHTFHAECIDKWLGTHSTCPICRTEAEPRLQPEPREAMVMIRTVPPAPAPPSDGTNSSSLACSEGTSEGAAQCSAKSGASTSRLSSFRRMLSRGSSRTTQSCGAPEDGIEDVERR* | 255 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi12g0241 | 254 | FunFam | E3 ubiquitin-protein ligase ATL6 | 81 | 168 | - | - | |
Vvi12g0241 | 254 | ProSiteProfiles | Zinc finger RING-type profile. | 120 | 162 | IPR001841 | - | |
Vvi12g0241 | 254 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 20 | 168 | - | - | |
Vvi12g0241 | 254 | MobiDBLite | consensus disorder prediction | 183 | 254 | - | - | |
Vvi12g0241 | 254 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Vvi12g0241 | 254 | CDD | RING-H2_EL5-like | 119 | 162 | - | - | |
Vvi12g0241 | 254 | MobiDBLite | consensus disorder prediction | 15 | 32 | - | - | |
Vvi12g0241 | 254 | Pfam | Ring finger domain | 119 | 162 | IPR001841 | - | |
Vvi12g0241 | 254 | SUPERFAMILY | RING/U-box | 97 | 173 | - | - | |
Vvi12g0241 | 254 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 80 | 168 | IPR013083 | - | |
Vvi12g0241 | 254 | SMART | ring_2 | 120 | 161 | IPR001841 | - | |
Vvi12g0241 | 254 | MobiDBLite | consensus disorder prediction | 192 | 242 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi12g0241 | Vvi-Chr12 | 3292360 | 3293124 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi12g0241 | 16 | 253 | C3H Transcription Factor Family | AT2G42360 | 44.355 | 5.49e-54 | 172 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi12g0241 | K19038 | - | vvi:100248798 | 479.559 |