Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0241 ATGAGTTTCCCTTTTCCTCCTATGCCATACAGTACGCCGTTGAGCAGTGATGATGATGATGATAATGGTAGCTACACTACTTCTCACAAAAGCTCGTCTGATCTAAACAGCAAGATCATGCTCACTGCAATCGTTTCATTATCGGTGGTGATCGCGCTTGTTATCACACTTCACATCTACGCTAGATGTGTCCTGAGGCGGCGGGCGCGGCGGCGGTCGGCCTTGCTCAGCATAACTCTCTCCCGAGTGCACTCCGATGAGCCACCCAAGACCGGGCTGGATCAATCCGTTATCGACTCTCTACCGATGTTCAAGTTCAGCGAGAATGATACCCAGGAGGAGGGTGGGACGACCGACTGTGCGGTATGCTTGAGTGTCCTAGAGGAAGGAGAGATTGCCCGGCTTCTACCCAACTGCAAGCACACTTTCCATGCAGAGTGCATAGATAAATGGTTGGGCACACACTCAACGTGCCCCATCTGCCGCACGGAGGCTGAGCCCCGCCTGCAGCCCGAGCCCCGTGAGGCTATGGTCATGATCAGGACTGTTCCCCCCGCACCCGCGCCTCCTTCAGATGGAACTAACTCATCGTCCTTGGCATGCTCGGAAGGGACATCAGAGGGTGCGGCGCAATGCTCGGCTAAGTCTGGTGCATCGACTTCTCGGTTGAGTTCATTCAGGAGGATGCTTAGTAGGGGATCATCAAGGACAACTCAATCCTGTGGTGCCCCAGAAGATGGTATAGAAGATGTTGAGAGGCGATGA 765 0.5412 MSFPFPPMPYSTPLSSDDDDDNGSYTTSHKSSSDLNSKIMLTAIVSLSVVIALVITLHIYARCVLRRRARRRSALLSITLSRVHSDEPPKTGLDQSVIDSLPMFKFSENDTQEEGGTTDCAVCLSVLEEGEIARLLPNCKHTFHAECIDKWLGTHSTCPICRTEAEPRLQPEPREAMVMIRTVPPAPAPPSDGTNSSSLACSEGTSEGAAQCSAKSGASTSRLSSFRRMLSRGSSRTTQSCGAPEDGIEDVERR* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0241 254 FunFam E3 ubiquitin-protein ligase ATL6 81 168 - -
Vvi12g0241 254 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Vvi12g0241 254 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 168 - -
Vvi12g0241 254 MobiDBLite consensus disorder prediction 183 254 - -
Vvi12g0241 254 MobiDBLite consensus disorder prediction 1 32 - -
Vvi12g0241 254 CDD RING-H2_EL5-like 119 162 - -
Vvi12g0241 254 MobiDBLite consensus disorder prediction 15 32 - -
Vvi12g0241 254 Pfam Ring finger domain 119 162 IPR001841 -
Vvi12g0241 254 SUPERFAMILY RING/U-box 97 173 - -
Vvi12g0241 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 168 IPR013083 -
Vvi12g0241 254 SMART ring_2 120 161 IPR001841 -
Vvi12g0241 254 MobiDBLite consensus disorder prediction 192 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0241 Vvi-Chr12 3292360 3293124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0241 16 253 C3H Transcription Factor Family AT2G42360 44.355 5.49e-54 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0241 K19038 - vvi:100248798 479.559