Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0240 ATGAAGAGTGCTGGAGGGGGAGAGATAGTGCAAGTCCAAGGAGGCCACATTGTGCGGTCCACAGGGCGGAAAGACCGGCATAGCAAGGTCTACACTGCAAAAGGTCCTAGGGACCGCAGGGTTCGTTTATCAGCCCACACAGCCATTCAATTCTATGATGTGCAGGATCGGCTGGGCTATGACAGGCCCAGCAAAGCCGTAGATTGGCTAATCAAGAAGGCAAAATCTTCCATAGACAAGCTTGCTGAGCTACCACCATGGCACCCCATTGCCCTGGACCCCAATGCCAGTGCTGGGACTAGCGACATAGGCATGGCTCAGCAGTCCCAGGAGTCCAATTATGTGTTCCCTCCATTGGGTGGTGGGGGTGGGGTTGGTGGTGAAAACCCAAGCAATGATTCTGCCTTCATTGCACCACCTCTGGACTCTGATTCCATTGCTGACACTATGAAATCTTTCTTTCCCACTAGTTCAGGGACTTCCTCAATCAATTATCAGAACTACCCGCCTGATAGCAACCATCATAATGAAGATCTTTGTCTATCTCTTCATTCTTTCCAAGACCCAGATGCGGAGTCCAACCACAAGAACCTTTTTGCCAGTGCAGCACAAGTTGGGTATGAGACTAATTTCCAGAGAATGGTGAGTTGGGGAGGAGGTGGTGGAGATTCAGAGAGTCGCGGTGGATTTGGGTTTATGTTTAACTCACCTCCAATGCCAATGCCACAGCCACAGCCACCAACATTGCTGAGCCAAGGCTCAGAATTTTCACAGAGGGGACCCCTTCAGTCCAGTTTTGCTCCTGCTGTTCGTGCTTGGAATGAGCTTCCTATTGCTTCTGGGGCAATGCATCAATCTTCACTCTCTGATGGCAGGTTTGTGCCAAATGGAGTCCCAGGTTTTCGAATTCCAGCACGAATTCAGGGTGAGGAGGAGCATAGCGTGGTCTCAGATAGGCCATCCTCTTCCTCCCCCAACTCTCATCACTGA 990 0.5081 MKSAGGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELPPWHPIALDPNASAGTSDIGMAQQSQESNYVFPPLGGGGGVGGENPSNDSAFIAPPLDSDSIADTMKSFFPTSSGTSSINYQNYPPDSNHHNEDLCLSLHSFQDPDAESNHKNLFASAAQVGYETNFQRMVSWGGGGGDSESRGGFGFMFNSPPMPMPQPQPPTLLSQGSEFSQRGPLQSSFAPAVRAWNELPIASGAMHQSSLSDGRFVPNGVPGFRIPARIQGEEEHSVVSDRPSSSSPNSHH* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0240 329 ProSiteProfiles TCP domain profile. 23 81 IPR017887 -
Vvi12g0240 329 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 263 IPR005333 GO:0003700
Vvi12g0240 329 MobiDBLite consensus disorder prediction 1 27 - -
Vvi12g0240 329 MobiDBLite consensus disorder prediction 305 329 - -
Vvi12g0240 329 Pfam TCP family transcription factor 22 93 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0240 Vvi-Chr12 3281712 3282701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0240 5 329 TCP Transcription Factor Family AT3G15030 44.304 2.39e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vvi12g0240 TCP 1.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0240 - - vvi:100243659 590.112