Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0224 ATGGAACTACCTGTGAAGGCACCAGCCGGCAGCTGCAAAGTTCAATATAGAATAAGAACCAAGGAGTTGACCTACAGGTTATCTCGGGGATATGATGAACTCAATTGCTTTGGCTCTTGGGATGAACCCAACCATGTTCCTAGGTATATTTTGAAGAATGTAAACTGTGAAGCCAGGCCAGGGGAGATCACAGCAATCGCTGGTCCGAGTGGGGCGGGGAAGACAACATTGTTAGAAATTCTAGCAGGTGTTGTCCGGCCAAGTCGAGTCTCTGGTCAAATTCTTGTGAATGACCAGCCGATGGATGCTACTTGTTTTAGGAGAGTATCGGGTTATGTCACACAAGAAGATGCTCTCTTCCCGCTTCTTACCATTGAAGAAACCCTCATGTATAGCGCCCGGCTCAGGCTACGTGGTGGGCGTGACAGGGCTGCAGCTAGAGTAAAAGAGCTGTTGAAGGAGCTTGAACTAGAGCATGTTGCAGGTGCGAGAATTGGTGATGAATCCAGCCGTGGCATCTCAGGTGGTGAGAAGCGCAGACTTTCCATTGGTGTTGATCTAGTTCATGACCCAACTGTTCTTCTGATCGATGAACCAACATCAGGACTGGATTCAGCTTCAGCTCACCATGTAGTTCTGTTGCTGAAATCCATGGCTACAAATCAAGGTAAGACAATTGTGCTAACTATCCATCAACCAGGTTTCAGGATTCTCGATCTATTTGACCAAGTTGTGTTGTTATCAAATGGAACTGTTCTTCACCATGGGCCCTTGCATCTCCTCGAGCATCGGCTAAAGATTGCAGGTCATTGCATTCCTCAGCATGTCAATGTGCTGGAGTTTGCCATTGATGTTACTGAAAGCCTGGTTACAGATATGGAAGAAAACAAACCAGTAAATGGTGAAATAGAACAAGGTTTTGGGCATATCAACGAACTTCCCAACTTGAGTAATGTTGATGAAAGTCGTATATGTTACCCCAATTCCCACTTTGAGGAAGTTCTACTACTGGGGCAGAGATTCTCCAGAAACATTTTCAGAACCAAACAACTCTTCACTGCAAGAACAACACAAGCCGTGCTTGCTGGATTTGTACTTGGGACAATTTTTAAGAACGAAGCTAATGACCCAAGCAAATTTAAACTACATACTCAAATTGGATTTTTTGCTTTCAGCCTCACCTTCTTGCTATCTTCCACGACAGAAGGGCTACCTATTTTCTTGCAAGAGAGGAGAATTTTAATGAGGGAGACCTCAAGAGGAGCATACAGAGTCTCTTCTTATGTTGTAGCAAACACTCTCATCTTCCTTCCCTTCCTTTTAACAGTGGCTCTTCTCTACACCACCCCAGTCTACTGGTTAGTTGGGTTGAGGAGGGAAATCGATGGATTCCTCTATTTCTCTCTAGTGGTTTGGATCATTGTTTTGATGTCAAACTCTTTCATCGCATGTTTTAGCGCGCTTGTACCGAATTTCATCATTGGAACATCTTTGATTGCTGGCCTTATGGGATCTTTTTTTCTCTTTTCTGGGTATTTCATATCAAAGGAGGACATACCAAGGTACTGGATTTTCATGCACTACTTGAGTTTGTTTAAGTACCCATTTGAGTGCTTTATGATAAATGAGTATGGAGGAAAGAAAGGGAAATGTTTGGAGAGTCAAGGCCTGAAAGAATCACAAAAGTGGAGCAATTTAGGTGTGATGTTGGGTTTCATCTTTGGATATAGGTTTCTTTGTTTCTTGATTCTGTGGTACAGGTCCTATAGACATAGAAGTTAG 1782 0.4332 MELPVKAPAGSCKVQYRIRTKELTYRLSRGYDELNCFGSWDEPNHVPRYILKNVNCEARPGEITAIAGPSGAGKTTLLEILAGVVRPSRVSGQILVNDQPMDATCFRRVSGYVTQEDALFPLLTIEETLMYSARLRLRGGRDRAAARVKELLKELELEHVAGARIGDESSRGISGGEKRRLSIGVDLVHDPTVLLIDEPTSGLDSASAHHVVLLLKSMATNQGKTIVLTIHQPGFRILDLFDQVVLLSNGTVLHHGPLHLLEHRLKIAGHCIPQHVNVLEFAIDVTESLVTDMEENKPVNGEIEQGFGHINELPNLSNVDESRICYPNSHFEEVLLLGQRFSRNIFRTKQLFTARTTQAVLAGFVLGTIFKNEANDPSKFKLHTQIGFFAFSLTFLLSSTTEGLPIFLQERRILMRETSRGAYRVSSYVVANTLIFLPFLLTVALLYTTPVYWLVGLRREIDGFLYFSLVVWIIVLMSNSFIACFSALVPNFIIGTSLIAGLMGSFFLFSGYFISKEDIPRYWIFMHYLSLFKYPFECFMINEYGGKKGKCLESQGLKESQKWSNLGVMLGFIFGYRFLCFLILWYRSYRHRS* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0224 593 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 16 578 - -
Vvi12g0224 593 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 18 274 IPR003439 GO:0005524
Vvi12g0224 593 FunFam ABC transporter G family member 10 35 280 - -
Vvi12g0224 593 Pfam ABC transporter 51 201 IPR003439 GO:0005524
Vvi12g0224 593 Pfam ABC-2 type transporter 231 295 IPR043926 GO:0140359
Vvi12g0224 593 ProSitePatterns ABC transporters family signature. 173 187 IPR017871 GO:0005524|GO:0016887
Vvi12g0224 593 Gene3D - 43 283 IPR027417 -
Vvi12g0224 593 SMART AAA_5 60 251 IPR003593 GO:0016887
Vvi12g0224 593 CDD ABCG_EPDR 50 256 - -
Vvi12g0224 593 Pfam ABC-2 type transporter 334 544 IPR013525 GO:0016020|GO:0140359
Vvi12g0224 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 265 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0224 Vvi-Chr12 3103958 3105784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0224 43 263 Calmodulin-binding Proteins AT2G36910 26.201 2.54e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0224 K05681 - vvi:100267668 1144.41