Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0223 ATGGAGGGGTTTTCTACGGATTTCCCGGGGTTCTCTGATGGGTTTTCAGAGAATTCGGGGTATGGGGCGATAATTAGAGGTGGGTCATCGTCGTCGTCGTTGTTGGTGTTGGATAGTGAGAGAGGAGAGCTTGTGAGGGCTCCAGCGAGGTTGGGGCCAAATGAGGTGAAGGCGGAGAAGGCTATGGTGGCTCTGAAAAATCATAGTGAGGCGGAGAGGAGGCGGAGAGGGAGGATTAATGCTCATCTAGCCACGCTCCGGGGCATAATCCCGGGTACAAAGAAGATGGACAAGGCATCTTTGCTTGGTGAAGTTGTTAGCCACTTGAAGGAACTGAAGAGGTCTGCAGCAGAAATTAGTAAAGGCTTTCTTGTTCCAATGGATATCGATGAAGTAAGGGTTGAGCAACAAGAGGGTGGTTTAGATGAGGCCCCGTATTCTATCAAGGCATCTCTATGTTGTGATTATAAACCTGGTGTTTTATCAGATTTAAGACGAGCACTTGACACTGTCCATCTGAAAACAGTTAGGGCAGAGATTGCGACCCTTGGAGGTAGGATGAAGAATGTTTTTGTGATGACTGGCTGTAAAGATGGCAACCTTGAAGATACTGAAACGAGGAAGCTTCATGCAAACTCTGTTCATCAGGCCCTCAGGTCTGTGCTTGATAAATTTCCTGCTTCACAGGATTTCTCATCAAGAAGCACGTCTTCGAACAAGAGGCAAAGGATTTCTATTTTCAATTCTTCGAGCTCATCTCCATTTGGAGACTTCTGGTGA 780 0.4692 MEGFSTDFPGFSDGFSENSGYGAIIRGGSSSSSLLVLDSERGELVRAPARLGPNEVKAEKAMVALKNHSEAERRRRGRINAHLATLRGIIPGTKKMDKASLLGEVVSHLKELKRSAAEISKGFLVPMDIDEVRVEQQEGGLDEAPYSIKASLCCDYKPGVLSDLRRALDTVHLKTVRAEIATLGGRMKNVFVMTGCKDGNLEDTETRKLHANSVHQALRSVLDKFPASQDFSSRSTSSNKRQRISIFNSSSSSPFGDFW* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0223 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 112 IPR011598 GO:0046983
Vvi12g0223 259 SMART finulus 69 118 IPR011598 GO:0046983
Vvi12g0223 259 Gene3D - 57 121 IPR036638 GO:0046983
Vvi12g0223 259 CDD bHLH_AtAIG1_like 59 134 - -
Vvi12g0223 259 Pfam Helix-loop-helix DNA-binding domain 67 112 IPR011598 GO:0046983
Vvi12g0223 259 PANTHER TRANSCRIPTION FACTOR BHLH30 30 250 IPR045847 GO:0003700|GO:0006355
Vvi12g0223 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 118 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0223 Vvi-Chr12 3100280 3101860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0223 27 249 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.149 1.34e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi12g0223 HLH 5.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0223 - - vvi:100267703 474.937