Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0202 ATGAACGACGGCACCGGAACTCCTTCGCCGGCGACTGCCCCACCGAGACCGTTACAGCCGTTGGCTTGCCGTGAAGATTGCTGGACCGAGGACGCTACCCATACTCTCATCGAGGCCTGGGGTGACCGTTATCTTGAGCTCAACCGCGGCAACCTCCGGCAGAAGCACTGGCAGGAGGTGGCTGACGCCGTCAACGCCCTTCACGGCCACCTTAAGAAGGCTCGCCGGACGGACGTTCAGTGCAAGAACCGTATCGATACGTTGAAGAAGAAGTACAAGATCGAAAAGTCTAGGGTTTCGGACTCGAACGGGGCGTTGACGAGTCAATGGCCATTCTACGAACGGCTTGATGCGCTAATAGGATCGAACATGCCGGCAAAGAAACCGTCGCCGCCGGTTTACCGGAAAACACCACCAATGCTTCCGCCAGTGCCCGTGGGTCCCCGATCGGTAATGCATAAACGTCCGGCTCCGGTCACCGCCGACGAGTCCTTCCGTCGGAACTTCTCCGTGGTGGCTGCTGCGGCGGCAGCTGTGGAGGAGGTGGAGGAGGCGGAGTCGGCAAGGTCGGAGTCTGACGGTGACGGAGGCAGGGAAGGGGTGAAGGAATTGGCTCAGGCGATTGTGAGGTTCGGAGAGATTTATGAGAAAGTTGAGGAGTCTAAGCAGAAGCAGATGATAGACTTGGAGGTGAAGAGAATGCAGTTTGCAAGGGATTTGGAGATTCAGAGGATGAAACTGTTCATGGATACTCAGGTTCAACTTGAAAAAATTAAGCATGCTAAGCGATCTTCCGGGAATGGCTGA 807 0.5613 MNDGTGTPSPATAPPRPLQPLACREDCWTEDATHTLIEAWGDRYLELNRGNLRQKHWQEVADAVNALHGHLKKARRTDVQCKNRIDTLKKKYKIEKSRVSDSNGALTSQWPFYERLDALIGSNMPAKKPSPPVYRKTPPMLPPVPVGPRSVMHKRPAPVTADESFRRNFSVVAAAAAAVEEVEEAESARSESDGDGGREGVKELAQAIVRFGEIYEKVEESKQKQMIDLEVKRMQFARDLEIQRMKLFMDTQVQLEKIKHAKRSSGNG* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0202 268 MobiDBLite consensus disorder prediction 127 154 - -
Vvi12g0202 268 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 18 262 IPR044823 -
Vvi12g0202 268 Pfam Myb/SANT-like DNA-binding domain 25 119 IPR044822 -
Vvi12g0202 268 Gene3D - 28 94 - -
Vvi12g0202 268 MobiDBLite consensus disorder prediction 131 146 - -
Vvi12g0202 268 FunFam trihelix transcription factor ASIL2 28 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0202 Vvi-Chr12 2907294 2908719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0202 189 263 Trihelix Transcription Factor Family AT3G14180 41.558 3.14e-15 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi12g0202 Myb_DNA-bind_4 1.1e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0202 - - vvi:100260870 499.204