Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0200 ATGGAGGAGACACGAGATGATGCAGGGCCAGCAGAGCAAGGGTCTCCTGTTACAACATGGTGGCCATCAGATTTCATTGAAAGATTTGGATCTGTTTCTCTGGTTTCTCAAGAAGAAATTTTGAGTAATAAAAATTCTAATAGCAACACTGAACAAGATGAGCTGTCATCTCAGACAGCCTCACAAATTCTCTGGAGCACTGGAATGCTTTCTGAACCGATTCCTAATGGTTTCTACAGTGTCATTCCGGACAAAAAGCTTAAGGAGATTTTTGATGATATTCCTACTCTGGATGAGCTTTATGCTTTGGGAAGCGAGGGTGTCAGAGCTGATATCATTCTTGTAGATGCTGTGAGAGATAAAAAATTATCTATGCTGAAGCAACTAATTGTGGCATTGGTGAAGGGACTAAACTCAAATCCAGCTGCAGTGATTAAAAAGATTGCTGGATTGGTTTCAGATTTCTATAAGCGGCCAAATTTGGAACTAAGTCCAGCAAAAGCTGCACTAGAGGAAACCTCTCATGTGTCTGAGAATCGAGTAGCCCAGTTACTGGGCCAAATAAAACATGGTTCTTGCCGTCCTCGGGCAATTCTATTCAAAGTTCTTGCAGATACTGTCGGTCTTGAAAGCAGGCTCATGGTGGGTTTACCTAATGATGGGGCTATTGGGTGCGTAGACTCATATAAACATATGTCTGTGATAGTCATGTTGAATTCTGGGGAACTACTGGTCGATCTGATGCGATTTCCTGGCCAGCTGATACCTAGATCAACCAGGGCAATTTTTATGACCCATATTTCTGCAGCAGGGGAAAGTGACTCTGCAGAGAATGATTCTTGTGATTCTCCCCTAGAACCAAACAGTCCTTTGTATGGTTTTTCAGATAGAGTTGACCCTGACAGTACTGAGAAAGATGAGGGCCTTCAGTTCCAACGGAGATTAGAAGCATCATCAAATGTATCAGGCCCTTCTTTACGGAATGTAATGCTGCGATCTACCCCCTCTATTGATAGAAAATTGAGTTTATCGCATAGTGAACCCAATATTGCTACTACTTTTTGGCGACGGAGCCGGAGAAAGGTCATTGCTGAACAACGAACTGCCAGTTCAAGTCCAGAGCACCCTTCATTTCGAGCACGTGGGCGGTCAATGCTTAGCGGTGATAGGAAATCATTTAGAGATTATGCTGATGACATAGCTGCCTCAAGCTATAGGTCAGATGGTGCATCAACATCAACGTCAGAAACTCGAAGAATAAGAAGAAGAAGCATTAGTATTACTCCAGAGATTGGCGATGATATCGTAAGGGCTGTACGTGCAATGAATGAAACACTGAAGGCTAACCGTCTTATGAGAGACCAAGGCGATGACAGGGCATTTTCCAGTAATCCAGATATTCAAAAAAATGTATCTGATTTCCATCTTGATGGTCATGGGGAAATATCTCATGGAAGCTCTTCTATGTATACCCTGCCTAGGGAGCAAATAAGTTCCCAAAAGGCAATATCGTTGCCTTCATCTCCTCATGAATTTAGGAGTCAGACTTCTGGGAGAAGTGGAACTTCAGACATAGTGAATGATGAAATGGTTTCAATCTGGAACAGGGTTCTTGAAAAACCAATGTTCCATAGCAAGCCTCTATTACCTTTCCAAGAATGGAATATTGATTTCTCAGAATTAACTGTTGGAACTCGTGTTGGGATTGGGTTCTTTGGAGAAGTTTTTCGTGGCATTTGGAATGGGACAGATGTTGCCATCAAGGTTTTTCTGGAGCAAGATCTTACTGCTGAGAACATGGAAGATTTCTGCAATGAAATATCCATCCTTAGGTATTACTTATTGATATGTTGA 1854 0.4213 MEETRDDAGPAEQGSPVTTWWPSDFIERFGSVSLVSQEEILSNKNSNSNTEQDELSSQTASQILWSTGMLSEPIPNGFYSVIPDKKLKEIFDDIPTLDELYALGSEGVRADIILVDAVRDKKLSMLKQLIVALVKGLNSNPAAVIKKIAGLVSDFYKRPNLELSPAKAALEETSHVSENRVAQLLGQIKHGSCRPRAILFKVLADTVGLESRLMVGLPNDGAIGCVDSYKHMSVIVMLNSGELLVDLMRFPGQLIPRSTRAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSDRVDPDSTEKDEGLQFQRRLEASSNVSGPSLRNVMLRSTPSIDRKLSLSHSEPNIATTFWRRSRRKVIAEQRTASSSPEHPSFRARGRSMLSGDRKSFRDYADDIAASSYRSDGASTSTSETRRIRRRSISITPEIGDDIVRAVRAMNETLKANRLMRDQGDDRAFSSNPDIQKNVSDFHLDGHGEISHGSSSMYTLPREQISSQKAISLPSSPHEFRSQTSGRSGTSDIVNDEMVSIWNRVLEKPMFHSKPLLPFQEWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILRYYLLIC* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0200 617 Gene3D Phosphorylase Kinase; domain 1 552 613 - -
Vvi12g0200 617 MobiDBLite consensus disorder prediction 273 307 - -
Vvi12g0200 617 MobiDBLite consensus disorder prediction 365 386 - -
Vvi12g0200 617 MobiDBLite consensus disorder prediction 500 521 - -
Vvi12g0200 617 SUPERFAMILY Protein kinase-like (PK-like) 538 611 IPR011009 -
Vvi12g0200 617 Pfam Ethylene-responsive protein kinase Le-CTR1 57 255 - -
Vvi12g0200 617 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 329 611 - -
Vvi12g0200 617 ProSitePatterns Protein kinases ATP-binding region signature. 567 588 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0200 Vvi-Chr12 2837402 2883331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0200 1 610 MAP Kinase Kinase Kinase AT3G58640 66.937 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Vvi12g0200 EDR1 3.6e-55 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0200 - - vvi:100255804 1183.32