Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0195 ATGGCTGAGAGAATAGAGATTTCTGATGATAATAGGAGTGATGGAAGTGAAATTCAAACCAAAACCTCATCTCTATTATGTTTTCCAGGGCATTTGTCCTTTGACTTGAATCAAAAGGCCATGGATGAAGAGGATAGTAGCACCACTGGTGTTCCTGAAAATGAAGTTAAAGAGGACGAGACATCAACAGATGCTAATTACAGTAACAGTAGTAACAACACAACTGTAGAAGGGAAAGAACGAACAACAGTTAGGCAATATATTCGATCAAAAATGCCTAGGCTCCGTTGGACTCCTGATCTCCATCTTGCTTTTGTGAATGCTGTTGAAAGGCTTGGTGGGCAAGAAAGAGCAACTCCCAAATTAGTTCTTCAGTTGATGAATGTGAGAGGACTTAGCATAGCTCATGTAAAGAGTCACTTGCAGATGTATCGAAGCAAGAAGCTTGATGATTCTGGACAAGTTCTATCTCACACGAGTAGACCGATGTATGTAAGAGATCACATTCTGGAGATGTACCAAAGAGCCAGTCCTTACGGACACTTTAGAATGGAGAACAGGAGCCACTTCTTTTCTCCTGTATTGAGACAGAAGTTTGACCCCAAAGCTAGCTCTTCAAGAAACCAACAGTGGGCTTTCGATCATGATGTGAGGCAAACAAGTTCGCTATGGAGGAAGGATTCTGAACTTGATCTGATGAGTACGGATTGGAACAAGGACCGGTCAACAAACTCACACCTGTTTGATGTAAGGGATGGGGGAACAGGAATTGTGCCGATTCATACTAGCCGATTTCTTGAAGAGAAGAAGTGGCCTCCACGGGAGTTGATCGAAAATCAAGGGAAGGGTAGAAATAATTCTCAAAATATATGTTGGGATGGTTCCTATTCTGAACTTCTATTAAACCAAATGCATCCGAAGCCAATTTCATTTGGTGGCAATAACTATGCCATGCAGCCTTCTATTTGGAGTACCAATCCCAGCATCATCAACAAACAACTTCAATCCAACAGATGTAATCCCTTGTTCTTATCAAATAGCTTTGAACCTGAGTTTGAATCCCCATTTCGAGTCGAGCTCCACAGGTTACAAGAAAAACAACCCCAGAGCATAAATGAAATGGTATTGCAAGCAGAAGAAAGTGCCTTTGTAGACAGGTTTAAAGAGAAGAAACAGCTACCTGATTTACAGTTAAGTTTGAGCCACAACTTTGAAATTGGTAATGAAGTGAATATTAATCCTCGGGAAAGCACCAAAGAGATCAGCACAATGCTTTCTCTTTCTATGGCCAACTCTTCGTCGAGAAAACAAGCACAATCTAGTGAAAACAGAAGAGATTTGGAAGTTAAAATTTGGGATAGTTACAAACAAGTGGTACCAAGGCCACAGGGCTGA 1395 0.4115 MAERIEISDDNRSDGSEIQTKTSSLLCFPGHLSFDLNQKAMDEEDSSTTGVPENEVKEDETSTDANYSNSSNNTTVEGKERTTVRQYIRSKMPRLRWTPDLHLAFVNAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDDSGQVLSHTSRPMYVRDHILEMYQRASPYGHFRMENRSHFFSPVLRQKFDPKASSSRNQQWAFDHDVRQTSSLWRKDSELDLMSTDWNKDRSTNSHLFDVRDGGTGIVPIHTSRFLEEKKWPPRELIENQGKGRNNSQNICWDGSYSELLLNQMHPKPISFGGNNYAMQPSIWSTNPSIINKQLQSNRCNPLFLSNSFEPEFESPFRVELHRLQEKQPQSINEMVLQAEESAFVDRFKEKKQLPDLQLSLSHNFEIGNEVNINPRESTKEISTMLSLSMANSSSRKQAQSSENRRDLEVKIWDSYKQVVPRPQG* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0195 464 Gene3D - 92 149 - -
Vvi12g0195 464 SUPERFAMILY Homeodomain-like 91 147 IPR009057 -
Vvi12g0195 464 MobiDBLite consensus disorder prediction 37 83 - -
Vvi12g0195 464 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 72 208 IPR046955 GO:0003700
Vvi12g0195 464 MobiDBLite consensus disorder prediction 63 81 - -
Vvi12g0195 464 FunFam Myb family transcription factor 91 149 - -
Vvi12g0195 464 Pfam Myb-like DNA-binding domain 95 145 IPR001005 -
Vvi12g0195 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 149 IPR017930 -
Vvi12g0195 464 NCBIfam myb-like DNA-binding domain, SHAQKYF class 93 148 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0195 Vvi-Chr12 2778598 2781009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0195 84 183 G2-like Transcription Factor Family AT2G42660 60.748 5.34e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi12g0195 Myb_DNA-binding 5.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0195 - - vvi:104880828 941.028