Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0193 ATGGCAGGAGTCGGACCGTTGACGCAGGACTGGGAACCGGTGGTGATCCGGAAGAAGCCTCTGAACGCTGCCGCCAAGAAGGACGAGAAAGCTGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCTATTCCAAATCAACAGATAATTGTCAAGTTGGAGAGGGCTCTTGGAGTGAAACTTCGAGGAAAGAAATAA 429 0.4662 MAGVGPLTQDWEPVVIRKKPLNAAAKKDEKAVNAARRSGAEIETLRKSHAGTNKAASSSTSLNTRKLDEETENLAHDRVPTELKKSIMQARMDKKLTQSQLAQMINEKPQIIQEYESGKAIPNQQIIVKLERALGVKLRGKK* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0193 142 Gene3D - 71 142 IPR010982 GO:0003677
Vvi12g0193 142 CDD HTH_XRE 87 138 IPR001387 -
Vvi12g0193 142 FunFam Multiprotein bridging factor 1 71 142 - -
Vvi12g0193 142 Pfam Helix-turn-helix 87 138 IPR001387 -
Vvi12g0193 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Vvi12g0193 142 MobiDBLite consensus disorder prediction 50 64 - -
Vvi12g0193 142 SUPERFAMILY lambda repressor-like DNA-binding domains 81 138 IPR010982 GO:0003677
Vvi12g0193 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Vvi12g0193 142 MobiDBLite consensus disorder prediction 27 48 - -
Vvi12g0193 142 MobiDBLite consensus disorder prediction 27 82 - -
Vvi12g0193 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 3 142 - -
Vvi12g0193 142 SMART mbf_short4 86 141 IPR001387 -
Vvi12g0193 142 MobiDBLite consensus disorder prediction 65 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0193 Vvi-Chr12 2679423 2692937 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Vvi12g0193 MBF1 1.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0193 K03627 - vvi:100245498 275.018