Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0188 ATGGAGGCGGATGAGAGTTATCGAAGGAAGGAGCGCACAGCGCTAGTTGCAATCGTGGTTCTGGCGTCTGTCGCCCTGGCGTCGTTGCTTGTCGCCTTCAGCTACTACTGCTACATCCGTAACAAGGTCTCCAGGCGCTTAAAGAACCAGAAAAGGATTGATTATGAGGATAAAGGTGGTTTTGCAAATCTCCAAGTTGCTACAGAGAAAGGGCTTCAGGTTTTCACTTTCAAGCAGCTACATTCTGCGACTGGTGGTTTTGGCAAATCTAATGTGGTTGGTCATGGTGGGTTTGGGTTGGTCTATCGAGGAGTGCTTCATGATGGTAGGAAAGTCGCTGTTAAGCTGATGGATCGGGCAGGAAAACAGGGAGAAGAGGAGTTCAAAGTGGAGGTGGAGTTACTAAGTCGGCTTCGATCTCCATATTTGCTGGCACTGCTTGGGTACTGTTCAGATAGTAACCATAAATTGCTGGTTTATGAGTTCATGGCAAATGGTGGACTGCAGGAGCATTTGTATCCCATCTCGGGTTCTAATTCTGTTTCTTCAAGGTTGGACTGGGAAACCCGGTTGAGGATAGCCCTGGATGCTGCCAAAGGTTTGGAGTATCTCCATGAACATGTCAGTCCCCCAGTGATCCACCGAGATTTTAAGAGCAGCAACATACTCTTAGACAAAAATTTCCATGCTAAAGTTTCTGACTTTGGATTGGCTAAACTTGGATCTGATAAAGCTGGTGGACATGTTTCCACCCGAGTGTTGGGCACCCAGGGATATGTTGCTCCTGAGTATGCATTAACTGGCCATCTGACAACAAAATCAGATGTGTACAGCTATGGGGTTGTCCTTTTGGAGTTGCTCACTGGCAGAGTTCCAGTGGATATGAAGAGAGCTTCTGGGGAAGGTGTTCTTGTATCTTGGGCTTTGCCCCACCTCACAGATAGAGAGAAGGTTGTACAGATAATGGATCCAGCACTGGAGGGTCAATACTCCATGAAAGAGGTTATTCAGGTGGCTGCTATAGCTACAATGTGTGTGCAACCAGAGGCAGATTATAGGCCATTGATGGCTGATGTTGTACAGTCACTGGTCCCACTGGTGAAGAATCACAGGCCAACTTCAAAGGTAGGCAGCTGCTCTAGTTTCCATGCAACCAAGTCTCCCCTTTCACAGGAGCCTGGAAAAGCAAGTTTGTGA 1197 0.4745 MEADESYRRKERTALVAIVVLASVALASLLVAFSYYCYIRNKVSRRLKNQKRIDYEDKGGFANLQVATEKGLQVFTFKQLHSATGGFGKSNVVGHGGFGLVYRGVLHDGRKVAVKLMDRAGKQGEEEFKVEVELLSRLRSPYLLALLGYCSDSNHKLLVYEFMANGGLQEHLYPISGSNSVSSRLDWETRLRIALDAAKGLEYLHEHVSPPVIHRDFKSSNILLDKNFHAKVSDFGLAKLGSDKAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRASGEGVLVSWALPHLTDREKVVQIMDPALEGQYSMKEVIQVAAIATMCVQPEADYRPLMADVVQSLVPLVKNHRPTSKVGSCSSFHATKSPLSQEPGKASL* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0188 398 SUPERFAMILY Protein kinase-like (PK-like) 69 363 IPR011009 -
Vvi12g0188 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Vvi12g0188 398 Gene3D Transferase(Phosphotransferase) domain 1 163 381 - -
Vvi12g0188 398 ProSiteProfiles Protein kinase domain profile. 87 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0188 398 Pfam Protein tyrosine and serine/threonine kinase 91 363 IPR001245 GO:0004672|GO:0006468
Vvi12g0188 398 FunFam Receptor-like serine/threonine-protein kinase ALE2 163 380 - -
Vvi12g0188 398 MobiDBLite consensus disorder prediction 373 398 - -
Vvi12g0188 398 FunFam Serine/threonine-protein kinase PBS1 55 162 - -
Vvi12g0188 398 PANTHER OS07G0668900 PROTEIN 58 371 - -
Vvi12g0188 398 CDD STKc_IRAK 93 366 - -
Vvi12g0188 398 MobiDBLite consensus disorder prediction 371 398 - -
Vvi12g0188 398 ProSitePatterns Protein kinases ATP-binding region signature. 93 122 IPR017441 GO:0005524
Vvi12g0188 398 Gene3D Phosphorylase Kinase; domain 1 48 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0188 Vvi-Chr12 2619941 2629783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0188 1 398 Receptor kinase-like Gene Family AT3G58690 81.454 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vvi12g0188 PK_Tyr_Ser-Thr 3.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0188 - - vvi:100252390 764.992