Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0187 ATGGAAAAGAAGGTTTTCCTCTTACCTTTTGCTTCAGTGATCCTTTTGTTGCACTATTGGGTCACTTGCCTTACACTAGCTGTGTCCTTAACCAACTTATCTGATGAGTATGCTCTTCTTGCCTTGAAAGCCCATATAACTTATGATTCTCAAGGCATTTTAGCAACAAACTGGTCGAGCACAACCTCCTACTGTAATTGGTTTGGTGTCTCTTGCAATGCCCACCATGGAAGATTGACAGCATTGAATCTTTCTAACATGGGTCTTGAAGGAACCATCCCACCACAAGTCAGCAACCTGTCTTTCCTTGCTTCCCTTGATCTCAGTGATAACTATTTCCATGCCTCTCTTCCCAATGAAATAGGTAACTGCAGGCAGCTTCGACAGTTATATTTTTTCAACAATGAACTTACTGGAAGCATTCCACAATCCTTGGGTAACTTATCGAAGCTTGAAGAGTCGTATCTTGATAGTAACCACTTGACAGGTGATATTCCAGAGGAGATGAGTAATCTTCTCAGCTTGAAGATATTATCATTGTTCGTCAACAACTTAACAGGTTCCATACCATCTGGCATTTTCAATATATCCCTATCCAAACTCGAAGAATTGTATCTTGGGGTTAACAACTTGGCAGGTGGAATTCCAAGAGGGATGGGCAATCTTCTTAATTTGAAAATGTTGAGCTTGGTTTCAAATAGGCTACAAGGTCCTATCCCGGAGGAAATCTTCAATATCTCTTCCTTGCAAATGATTGATTTTACAAATAACAGCCTTTCTGGCAATCTTCCAATAGCTATTTGCAACCACCTTCCAAAACTCCAACAGCTAATTCTTTCCAGCAATCAGCTCAGTGCCCAACTCCCTCCAAATCTCTCCTTATGTGGGCAGCTTCAAGTGCTGTCATCACTATCAAAAAATAAATTCACTGGAAGCATACCGATAGAAATTGGGAACTTGCCCATGCTTGAGGAGATCTATCTTGGAAGGAACAGCTTGACAGGAACCATTCCACCTTCATTTGGTAATTTATCAGCATTAAAGGTGCTTGACTTGCAAGAAAACAACATTCAGGGAAATATTCCCAAAGAGTTGGGGTGTCTTCTCAGCTTACAAAACCTGAGTTTGATATCAAATGACCTAAGAGGCATTGTACCAGAGGCAATCTTTAACATCTCAAAACTACAGTCAATTTCACTTGCAGATAATCACCTTTCAGGAAATCTTCCATCAAGTATTGGTGCTTGGCTTCCTAATCTTCTACAACTTCATATAGGAGGCAATGAATTCAGTGGAGTAATTCCTAGATCTATTTCAAACATTTCAAAACTCATCAGTCTAGATTTATCATATAACTTCTTCACCAGCTATGTGCCAAAAGATCTAGGCAACTTGAGATCCCTCCAGCATCTGGGCTTTGGGAGTAACTATTTGACTTATGAACACTCCACCTCAGAGCTAAGTTTTCTTACTTCTTTGACAAAGTGCAAATCCTTGAGGAGATTGTGGATACAAGATAATCCCCTAAAAGGTCATTTTCCAAATTCATTTGGGAATCTCTCTGTGTCTCTTGAAAGTATTGATGCATCCTCTTGCCAAATCAAAGGTGTGATTCCTACAGAAATTGGTAATTTGTCTAACTTGATGGCACTGAACCTCGGAGATAATGAACTGACAGGAATGATCCCAACAACATTGGGACAGCTCCAAAAGCTCCAGCAGTTGATTATTTCTGGAAATAGAATACATGGATCCATTCCTAATGATCTATGCCATTCAGAAAACTTGGGTTCCTTGCTTTTGAGTTCCAATGAACTTTCTGGACCGGTGCCAAGTTGCTTTGGGAATCTTACTGCACTACAACAACTCTTTCTTGACTCCAATGCATTAGCTTCCCAAATAACTTCATCACTGTGGAGTCTCGGAGGTATCTTGTACCTTAACTTGTCTTCAAATTTCCTGAATGGTAATCTACCTCTAGAAATAGGAAACATGAAGACCATAATAAAGTTGGATCTGTCAAAGAACCAATTTTCAGGTTATATTCCAAGCAGCGTAGGACAACTCCAGAACTTGGTTGAACTCTCCTTATCGAAAAATAACCTGCAAGGCCCAATACCCCTGAAGTTTGGCGATGTTGTAAGCTTGGAGTCCTTGGATCTATCTTGGAACAATCTGTCCGGTACCATTCCACAGTCACTAGAAGCCCTCATATATTTGAAACATCTCAATGTTTCTTTCAACAAACGACAAGGAGAAATTCGTAATGGAGGACCATTTGTGAACTTCACCGCCAAGTCTTTCATCTCCAATGAAGCACTATGTGGAGCACCACGATTTCAAGTCATGGCATGCAAGAAAGTCACCACTAGAAAATCAACGAAGGCAAAATCCCTCCTCTTGAAATGTGTTCTACCGACAATTGCATCGACAATAATTATATTGGCTCTCATTATTTTGTTGATAAGAAGACAAAAAAGGTTAGATATACCAATTCAAGTTGACTCATCACTCCCCACAACATATAGAAAGATTTCACACCAGGAGCTTCTTCATGCAACAAACTACTTTAGTGAAGGCAATTTGATCGGAAAAGGAAGCATGGGCACAGTATACAAAGGGGTATTATTTGATGGGCTGACTGCTGCAATAAAGGTCTTCAATTTAGAATTCCTAGGATCTTTCAAGGGTTTCGAAGCAGAATGTGAAGTAATGAGAAATATTCGTCATCGGAATCTTATCAAGATAATTAGTAGTTGCTCAAACCTTGGTTTCAAGGCCTTGGTGCTTGAGTTTATGCCTAATAGGAGCCTTGAGAGGTGGTTGTACTCTCACAACTATTGTTTAGATCTTATTCAAAGATTAAACATTATGATTGATGTAGCCTCTGCATTAGAGTATCTCCATCATGATTATTCAAACCCAGTGGTGCATTGTGACTTGAAGCCCAACAATGTTTTGCTAGATGAAGACAGGGTTGCACATGTAGGTGATTTTGGCATTGCGAAACTACTGCCAGGAAGTGAATCAAGACAACAAACTAAGACCTTAGGCCCAATTGGCTATATGGCACCAGAGTATGGTTCAGAAGGAATAGTATCTACGAGTGATGTTTATAGTAACGGGATTATGCTGTTGGAAGTCTTTGCAAGGAAAAAGCCTACGGATGAAATGTTCGTTGGGGATCCAACATTGAAGAGTTGGGTGGAGTCATTAGCTAGTACAGTGATGGAGTTCGTGGACACCAATCTACTGGACAAAGAGGACGAACATTTTGCCATAAAAGAGAACTGTGTCTTATGCATCATGGCATTAGCTTTGGAATGCACGGCTGAGTCTCCTGAGGATAGGATCAACATGAGAGATGTCGTTGCTCGACTCAAGAAGATTAGAATCAAATTGTTGATGTAA 3411 0.4013 MEKKVFLLPFASVILLLHYWVTCLTLAVSLTNLSDEYALLALKAHITYDSQGILATNWSSTTSYCNWFGVSCNAHHGRLTALNLSNMGLEGTIPPQVSNLSFLASLDLSDNYFHASLPNEIGNCRQLRQLYFFNNELTGSIPQSLGNLSKLEESYLDSNHLTGDIPEEMSNLLSLKILSLFVNNLTGSIPSGIFNISLSKLEELYLGVNNLAGGIPRGMGNLLNLKMLSLVSNRLQGPIPEEIFNISSLQMIDFTNNSLSGNLPIAICNHLPKLQQLILSSNQLSAQLPPNLSLCGQLQVLSSLSKNKFTGSIPIEIGNLPMLEEIYLGRNSLTGTIPPSFGNLSALKVLDLQENNIQGNIPKELGCLLSLQNLSLISNDLRGIVPEAIFNISKLQSISLADNHLSGNLPSSIGAWLPNLLQLHIGGNEFSGVIPRSISNISKLISLDLSYNFFTSYVPKDLGNLRSLQHLGFGSNYLTYEHSTSELSFLTSLTKCKSLRRLWIQDNPLKGHFPNSFGNLSVSLESIDASSCQIKGVIPTEIGNLSNLMALNLGDNELTGMIPTTLGQLQKLQQLIISGNRIHGSIPNDLCHSENLGSLLLSSNELSGPVPSCFGNLTALQQLFLDSNALASQITSSLWSLGGILYLNLSSNFLNGNLPLEIGNMKTIIKLDLSKNQFSGYIPSSVGQLQNLVELSLSKNNLQGPIPLKFGDVVSLESLDLSWNNLSGTIPQSLEALIYLKHLNVSFNKRQGEIRNGGPFVNFTAKSFISNEALCGAPRFQVMACKKVTTRKSTKAKSLLLKCVLPTIASTIIILALIILLIRRQKRLDIPIQVDSSLPTTYRKISHQELLHATNYFSEGNLIGKGSMGTVYKGVLFDGLTAAIKVFNLEFLGSFKGFEAECEVMRNIRHRNLIKIISSCSNLGFKALVLEFMPNRSLERWLYSHNYCLDLIQRLNIMIDVASALEYLHHDYSNPVVHCDLKPNNVLLDEDRVAHVGDFGIAKLLPGSESRQQTKTLGPIGYMAPEYGSEGIVSTSDVYSNGIMLLEVFARKKPTDEMFVGDPTLKSWVESLASTVMEFVDTNLLDKEDEHFAIKENCVLCIMALALECTAESPEDRINMRDVVARLKKIRIKLLM* 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0187 1136 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Vvi12g0187 1136 Pfam Protein kinase domain 858 1124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0187 1136 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 32 196 - -
Vvi12g0187 1136 Gene3D Transferase(Phosphotransferase) domain 1 933 1134 - -
Vvi12g0187 1136 CDD STKc_IRAK 863 1130 - -
Vvi12g0187 1136 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 495 789 - -
Vvi12g0187 1136 Gene3D Ribonuclease Inhibitor 374 481 IPR032675 -
Vvi12g0187 1136 Gene3D Phosphorylase Kinase; domain 1 823 932 - -
Vvi12g0187 1136 Pfam Leucine Rich Repeat 498 520 IPR001611 GO:0005515
Vvi12g0187 1136 SUPERFAMILY RNI-like 75 245 - -
Vvi12g0187 1136 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 933 1136 - -
Vvi12g0187 1136 FunFam Serine-threonine protein kinase plant-type 838 932 - -
Vvi12g0187 1136 ProSitePatterns Protein kinases ATP-binding region signature. 863 885 IPR017441 GO:0005524
Vvi12g0187 1136 PANTHER OS04G0122200 PROTEIN 89 193 - -
Vvi12g0187 1136 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 296 494 - -
Vvi12g0187 1136 ProSitePatterns Serine/Threonine protein kinases active-site signature. 976 988 IPR008271 GO:0004672|GO:0006468
Vvi12g0187 1136 ProSiteProfiles Protein kinase domain profile. 857 1132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0187 1136 SUPERFAMILY RNI-like 197 480 - -
Vvi12g0187 1136 Gene3D Ribonuclease Inhibitor 298 368 IPR032675 -
Vvi12g0187 1136 FunFam Leucine-rich receptor-like protein kinase family protein 197 293 - -
Vvi12g0187 1136 SUPERFAMILY Protein kinase-like (PK-like) 834 1127 IPR011009 -
Vvi12g0187 1136 SMART LRR_sd22_2 496 522 - -
Vvi12g0187 1136 SMART LRR_sd22_2 569 598 - -
Vvi12g0187 1136 SMART LRR_sd22_2 689 710 - -
Vvi12g0187 1136 SMART LRR_sd22_2 713 736 - -
Vvi12g0187 1136 SMART LRR_sd22_2 222 248 - -
Vvi12g0187 1136 SMART LRR_sd22_2 344 376 - -
Vvi12g0187 1136 Gene3D Ribonuclease Inhibitor 482 793 IPR032675 -
Vvi12g0187 1136 SUPERFAMILY L domain-like 496 778 - -
Vvi12g0187 1136 SMART serkin_6 857 1136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0187 1136 Pfam Leucine rich repeat 418 478 IPR001611 GO:0005515
Vvi12g0187 1136 Pfam Leucine rich repeat 670 726 IPR001611 GO:0005515
Vvi12g0187 1136 Pfam Leucine rich repeat 323 381 IPR001611 GO:0005515
Vvi12g0187 1136 Pfam Leucine rich repeat 523 582 IPR001611 GO:0005515
Vvi12g0187 1136 Gene3D Ribonuclease Inhibitor 33 194 IPR032675 -
Vvi12g0187 1136 Gene3D Ribonuclease Inhibitor 195 297 IPR032675 -
Vvi12g0187 1136 SMART LRR_typ_2 569 593 IPR003591 -
Vvi12g0187 1136 SMART LRR_typ_2 198 222 IPR003591 -
Vvi12g0187 1136 SMART LRR_typ_2 545 568 IPR003591 -
Vvi12g0187 1136 SMART LRR_typ_2 172 196 IPR003591 -
Vvi12g0187 1136 SMART LRR_typ_2 344 367 IPR003591 -
Vvi12g0187 1136 SMART LRR_typ_2 417 440 IPR003591 -
Vvi12g0187 1136 SMART LRR_typ_2 441 465 IPR003591 -
Vvi12g0187 1136 SMART LRR_typ_2 689 712 IPR003591 -
Vvi12g0187 1136 SMART LRR_typ_2 100 124 IPR003591 -
Vvi12g0187 1136 SMART LRR_typ_2 271 295 IPR003591 -
Vvi12g0187 1136 SMART LRR_typ_2 320 343 IPR003591 -
Vvi12g0187 1136 SMART LRR_typ_2 617 641 IPR003591 -
Vvi12g0187 1136 SMART LRR_typ_2 368 391 IPR003591 -
Vvi12g0187 1136 SMART LRR_typ_2 713 737 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0187 Vvi-Chr12 2614557 2619559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0187 38 1133 Receptor kinase-like Gene Family AT5G46330 34.934 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi12g0187 Pkinase 8.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0187 - K13420 vvi:100259207 1816.59