Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0186 ATGAACAACTTAACAGGTTCCATACCTGCCACCATTTTCAACATATCTTCTTTGCTCAACATTAGTCTCTCCTACAACAGCCTCTCTGGAAGTCTTCCCATGGATATGTGCAACACCAATCCAAATCTCAAGGAGCTTAATCTTACGTCAAATAACTTGAGTGGAAAGATCCCCACCAGTTTAGGCCAATGTACAAAGCTTCAAGTAATTTCCTTATCATATAATGAATTGACGGGGAGCATGCCAAGAGCAATTGGTAATTTGGTGGAGCTTCAGAGATTGTCTCTCCTCAATAACAGCTTGACAGGAGAAATACCTCAATCACTGTTGAACATCTCTTCATTGAGGTTTTTGCGTCTGGGAGAAAATAACCTAGTAGGTATCCTCCCTACAAGCATGGGTTATGATCTTCCCAAGCTTGAATTCATTGATCTCTCAAGCAATCAACTCAAAGGTGAAATCCCCTCCAGCTTGTTGCATTGTCGACAGCTCCGAGTGCTATCCTTATCAGTCAATCACTTAACTGGAGGCATACCAAAAGCTATAGGGAGTTTATCGAATCTTGAAGAATTATATCTTGATTATAACAATTTGGCAGGTGGAATTCCTAGAGAGATTGGGAATCTTTCAAATTTAAATATTCTGGACTTTGGGTCTAGTGGAATAAGTGGCCCTATTCCTCCTGAAATTTTCAATATCTCTTCTTTGCAAATCATTGATTTGACTGATAATAGCCTTCCTGGGAGTCTTCCAATGGATATCTGCAAACATCTTCCTAATCTCCAAGGGCTCTATCTTTCTTGGAATAAGCTCAGTGGTCAACTTCCTTCAACTCTGTCCTTATGTGGACAATTGCAGTCACTGTCTTTATGGGGGAATAGGTTCACAGGTAACATTCCACCTTCATTTGGTAATTTAACCGCCTTACAGGTTCTTGAATTGGCGGAAAACAATATTCCAGGTAACATCCCCAGTGAGTTGGGGAATCTCATCAACTTACAGTACTTGAAACTTAGCGCAAACAATCTAACAGGGATAATACCAGAAGCTATTTTCAATATCTCTTCATTACAAGAGATTGATTTTAGTAATAATAGCCTTTCCGGGTGTCTTCCAATGGATATCTGCAAACATCTTCCTGATCTTCCCAAGCTTGAATTCATTGATCTCTCAAGCAATCAACTCAAAGGTGAAATCCCTTCCAGCTTGTCGCATTGTCCACATCTCCGAGGGCTATCATTATCACTCAATCAGTTCACAGGAGGCATACCACAAGCCATAGGGAGTTTATCGAATCTTGAAGAATTATATCTTGCTTATAACAATTTGGTAGGTGGAATTCCTAGAGAGATTGGGAATCTTTCAAATTTAAATATTCTGGACTTTGGGTCTAGTGGAATAAGTGGCCCTATTCCTCCTGAAATTTTCAATATCTCTTCTTTGCAAATATTTGATTTGACTGATAATAGCCTTCTTGGGAGTCTTCCAATGGATATCTACAAACATCTTCCTAATCTCCAAGAGCTCTATCTTTCTTGGAATAAGCTCAGTGGTCAACTTCCTTCAACTCTGTCCTTATGTGGACAATTGCAGTCACTGTCTTTATGGGGGAATAGGTTCACAGGTAACATTCCACCTTCATTTGGTAATTTAACCGCCTTACAGGATCTTGAATTGGGGGACAACAATATTCAAGGTAACATCCCCAATGAGTTGGGGAATCTCATCAACTTACAGAACTTGAAACTTAGCGAAAACAATCTGACAGGGATAATACCAGAAGCTATTTTTAACATCTCAAAACTGCAGAGCCTTTCGTTGGCACAAAATCACTTTTCAGGCAGTCTCCCATCAAGTCTTGGCACTCAGCTCCCCGATCTTGAAGGGCTTGCTATAGGACGCAATGAATTCAGTGGAATAATTCCAATGTCTATTTCAAACATGTCAGAACTTACTGAGCTGGACATATGGGACAATTTCTTCACTGGTGATGTGCCAAAAGATCTAGGTAACTTGAGAAGGCTTGAATTTCTCAACCTTGGATCCAATCAATTGACTGATGAACACTCCGCCTCTGAGGTTGGTTTTCTTACTTCTCTGACCAATTGTAATTTTTTGAGAACATTGTGGATAGAAGATAATCCTTTAAAAGGTATTCTTCCAAATTCACTAGGGAATCTTTCCATTTCTCTTGAAAGTTTTGATGCATCAGCCTGCCAATTCAGAGGAACCATCCCCACAGGAATTGGTAATTTGACCAGTTTGATATCTCTAGAGCTAGGAGATAATGACTTGACAGGTTTGATTCCAACTACATTGGGTCAACTAAAGAAGCTCCAAGAATTAGGCATTGCTGGAAATAGACTACGAGGATCCATTCCAAATGATCTTTGTCGTTTGAAGAACTTGGGATACTTGTTTTTGAGTTCTAACCAACTAACTGGATCAATCCCAAGTTGTCTTGGATATCTTCCTCCACTACGAGAACTCTATCTTCACTCCAATGCATTAGCTTCCAACATTCCTCCATCCTTATGGACCCTTAGAGGTTTGTTGGTTCTTAACTTGTCTTCAAATTTCCTAACTGGCCATCTACCTCCCGAAGTTGGAAACATAAAGTCCATTAGAACATTGGACCTGTCAAAGAACCAAGTTTCAGGTCACATTCCAAGAACATTGGGAGAACTACAAAATTTGGAAGACCTTTCCTTGTCCCAAAACAGACTACAAGGCCCTATACCTCTAGAGTTTGGTGATTTGCTAAGCTTGAAATTCTTGGATTTGTCCCAAAACAATTTATCTGGAGTCATTCCCAAGTCATTAAAGGCTCTTACTTATCTCAAATATCTAAATGTTTCTTTCAATAAACTACAAGGAGAAATTCCGGATGGAGGACCTTTCATGAATTTCACTGCTGAATCGTTCATCTTCAATGAAGCCTTGTGTGGAGCACCTCACTTTCAAGTCATAGCATGTGATAAAAGCACTCGCAGTCGATCGTGGAGGACGAAGTTATTCATCTTGAAATATATTCTACCTCCAGTCATATCAATAATAACTTTAGTGGTTTTCCTTGTTTTGTGGATACGTAGACGAAAGAACTTGGAAGTGCCAACTCCAATTGACTCATGGCTTCCTGGATCACATGAAAAGATTTCCCACCAGCAACTTCTTTATGCAACAAACTACTTTGGTGAAGATAATTTGATTGGGAAAGGAAGCCTGAGCATGGTATATAAAGGGGTATTATCTAATGGCTTAACTGTTGCTGTAAAGGTTTTTAATTTAGAATTCCAAGGAGCCTTTAGGAGTTTTGATTCAGAATGTGAAGTGATGCAAAGTATTCGCCATCGGAATCTCGTCAAGATAATTACTTGTTGCTCCAACCTTGACTTCAAAGCATTGGTGCTCGAATATATGCCTAAAGGAAGCCTTGACAAGTGGTTGTATTCTCACAACTATTTTTTGGATCTCATCCAAAGATTAAACATCATGATTGATGTGGCATCAGCATTGGAGTATCTTCATCATGATTGTCCAAGCCTTGTGGTGCATTGCGACTTAAAGCCCAACAATATTTTGTTAGATGATGACATGGTTGCTCATGTGGGCGATTTTGGGATTGCAAGATTGTTGACTGAAACAGAGTCTATGCAACAAACAAAGACCTTGGGCACAATTGGCTACATGGCACCAGAGTATGGCTCAGATGGGATAGTATCCACAAAGGGCGATGTTTTTAGCTATGGGATCATGCTAATGGAGGTATTTGCAAGGAAGAAGCCTATGGATGAAATGTTCAATGGAGATCTAACCTTGAAAAGTTGGGTGGAGTCATTAGCTGATTCGATGATAGAGGTTGTGGATGCCAATCTATTGAGGAGAGAGGATGAAGACTTTGCCACAAAGCTGAGCTGTTTGTCCTCCATTATGGCTTTAGCTTTGGCCTGTACAACTGATTCACCTGAGGAGAGGATTGACATGAAAGATGTGGTAGTTGGACTTAAGAAGATCAAAATCGAACTGTTGACATAA 4035 0.3985 MNNLTGSIPATIFNISSLLNISLSYNSLSGSLPMDMCNTNPNLKELNLTSNNLSGKIPTSLGQCTKLQVISLSYNELTGSMPRAIGNLVELQRLSLLNNSLTGEIPQSLLNISSLRFLRLGENNLVGILPTSMGYDLPKLEFIDLSSNQLKGEIPSSLLHCRQLRVLSLSVNHLTGGIPKAIGSLSNLEELYLDYNNLAGGIPREIGNLSNLNILDFGSSGISGPIPPEIFNISSLQIIDLTDNSLPGSLPMDICKHLPNLQGLYLSWNKLSGQLPSTLSLCGQLQSLSLWGNRFTGNIPPSFGNLTALQVLELAENNIPGNIPSELGNLINLQYLKLSANNLTGIIPEAIFNISSLQEIDFSNNSLSGCLPMDICKHLPDLPKLEFIDLSSNQLKGEIPSSLSHCPHLRGLSLSLNQFTGGIPQAIGSLSNLEELYLAYNNLVGGIPREIGNLSNLNILDFGSSGISGPIPPEIFNISSLQIFDLTDNSLLGSLPMDIYKHLPNLQELYLSWNKLSGQLPSTLSLCGQLQSLSLWGNRFTGNIPPSFGNLTALQDLELGDNNIQGNIPNELGNLINLQNLKLSENNLTGIIPEAIFNISKLQSLSLAQNHFSGSLPSSLGTQLPDLEGLAIGRNEFSGIIPMSISNMSELTELDIWDNFFTGDVPKDLGNLRRLEFLNLGSNQLTDEHSASEVGFLTSLTNCNFLRTLWIEDNPLKGILPNSLGNLSISLESFDASACQFRGTIPTGIGNLTSLISLELGDNDLTGLIPTTLGQLKKLQELGIAGNRLRGSIPNDLCRLKNLGYLFLSSNQLTGSIPSCLGYLPPLRELYLHSNALASNIPPSLWTLRGLLVLNLSSNFLTGHLPPEVGNIKSIRTLDLSKNQVSGHIPRTLGELQNLEDLSLSQNRLQGPIPLEFGDLLSLKFLDLSQNNLSGVIPKSLKALTYLKYLNVSFNKLQGEIPDGGPFMNFTAESFIFNEALCGAPHFQVIACDKSTRSRSWRTKLFILKYILPPVISIITLVVFLVLWIRRRKNLEVPTPIDSWLPGSHEKISHQQLLYATNYFGEDNLIGKGSLSMVYKGVLSNGLTVAVKVFNLEFQGAFRSFDSECEVMQSIRHRNLVKIITCCSNLDFKALVLEYMPKGSLDKWLYSHNYFLDLIQRLNIMIDVASALEYLHHDCPSLVVHCDLKPNNILLDDDMVAHVGDFGIARLLTETESMQQTKTLGTIGYMAPEYGSDGIVSTKGDVFSYGIMLMEVFARKKPMDEMFNGDLTLKSWVESLADSMIEVVDANLLRREDEDFATKLSCLSSIMALALACTTDSPEERIDMKDVVVGLKKIKIELLT* 1345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0186 1344 Pfam Leucine Rich Repeat 432 454 IPR001611 GO:0005515
Vvi12g0186 1344 Pfam Leucine Rich Repeat 384 406 IPR001611 GO:0005515
Vvi12g0186 1344 Pfam Leucine Rich Repeat 706 727 IPR001611 GO:0005515
Vvi12g0186 1344 Pfam Protein kinase domain 1067 1331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0186 1344 ProSiteProfiles Leucine-rich repeat profile. 505 527 IPR001611 GO:0005515
Vvi12g0186 1344 SMART LRR_typ_2 137 161 IPR003591 -
Vvi12g0186 1344 SMART LRR_typ_2 382 406 IPR003591 -
Vvi12g0186 1344 SMART LRR_typ_2 575 598 IPR003591 -
Vvi12g0186 1344 SMART LRR_typ_2 41 64 IPR003591 -
Vvi12g0186 1344 SMART LRR_typ_2 672 695 IPR003591 -
Vvi12g0186 1344 SMART LRR_typ_2 185 209 IPR003591 -
Vvi12g0186 1344 SMART LRR_typ_2 824 848 IPR003591 -
Vvi12g0186 1344 SMART LRR_typ_2 920 943 IPR003591 -
Vvi12g0186 1344 SMART LRR_typ_2 776 800 IPR003591 -
Vvi12g0186 1344 SMART LRR_typ_2 503 527 IPR003591 -
Vvi12g0186 1344 SMART LRR_typ_2 258 282 IPR003591 -
Vvi12g0186 1344 SMART LRR_typ_2 551 574 IPR003591 -
Vvi12g0186 1344 SMART LRR_typ_2 896 919 IPR003591 -
Vvi12g0186 1344 SMART LRR_typ_2 306 329 IPR003591 -
Vvi12g0186 1344 SMART LRR_typ_2 752 775 IPR003591 -
Vvi12g0186 1344 SMART LRR_typ_2 430 454 IPR003591 -
Vvi12g0186 1344 SMART LRR_typ_2 599 623 IPR003591 -
Vvi12g0186 1344 SMART LRR_typ_2 330 353 IPR003591 -
Vvi12g0186 1344 Gene3D Ribonuclease Inhibitor 592 692 IPR032675 -
Vvi12g0186 1344 Gene3D Ribonuclease Inhibitor 500 591 IPR032675 -
Vvi12g0186 1344 SUPERFAMILY L domain-like 730 986 - -
Vvi12g0186 1344 FunFam Uncharacterized protein 378 497 - -
Vvi12g0186 1344 ProSiteProfiles Protein kinase domain profile. 1064 1343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0186 1344 Gene3D Transferase(Phosphotransferase) domain 1 1140 1342 - -
Vvi12g0186 1344 Gene3D Ribonuclease Inhibitor 378 499 IPR032675 -
Vvi12g0186 1344 CDD STKc_IRAK 1070 1338 - -
Vvi12g0186 1344 Gene3D Ribonuclease Inhibitor 226 377 IPR032675 -
Vvi12g0186 1344 Gene3D Ribonuclease Inhibitor 1 130 IPR032675 -
Vvi12g0186 1344 Gene3D Ribonuclease Inhibitor 131 225 IPR032675 -
Vvi12g0186 1344 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 1045 1139 - -
Vvi12g0186 1344 SUPERFAMILY Protein kinase-like (PK-like) 1042 1333 IPR011009 -
Vvi12g0186 1344 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 1 105 - -
Vvi12g0186 1344 Gene3D Phosphorylase Kinase; domain 1 1031 1139 - -
Vvi12g0186 1344 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 590 1332 - -
Vvi12g0186 1344 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1140 1344 - -
Vvi12g0186 1344 Gene3D Ribonuclease Inhibitor 693 1000 IPR032675 -
Vvi12g0186 1344 Pfam Leucine rich repeat 898 957 IPR001611 GO:0005515
Vvi12g0186 1344 Pfam Leucine rich repeat 480 540 IPR001611 GO:0005515
Vvi12g0186 1344 Pfam Leucine rich repeat 138 198 IPR001611 GO:0005515
Vvi12g0186 1344 Pfam Leucine rich repeat 284 343 IPR001611 GO:0005515
Vvi12g0186 1344 Pfam Leucine rich repeat 41 101 IPR001611 GO:0005515
Vvi12g0186 1344 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 498 592 - -
Vvi12g0186 1344 SUPERFAMILY L domain-like 2 202 - -
Vvi12g0186 1344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1183 1195 IPR008271 GO:0004672|GO:0006468
Vvi12g0186 1344 SMART LRR_sd22_2 430 456 - -
Vvi12g0186 1344 SMART LRR_sd22_2 88 114 - -
Vvi12g0186 1344 SMART LRR_sd22_2 800 826 - -
Vvi12g0186 1344 SMART LRR_sd22_2 920 941 - -
Vvi12g0186 1344 SMART LRR_sd22_2 306 332 - -
Vvi12g0186 1344 SMART LRR_sd22_2 185 211 - -
Vvi12g0186 1344 SMART LRR_sd22_2 137 160 - -
Vvi12g0186 1344 SMART LRR_sd22_2 551 580 - -
Vvi12g0186 1344 SMART LRR_sd22_2 896 917 - -
Vvi12g0186 1344 SMART LRR_sd22_2 503 518 - -
Vvi12g0186 1344 SMART LRR_sd22_2 382 405 - -
Vvi12g0186 1344 SUPERFAMILY L domain-like 137 444 - -
Vvi12g0186 1344 FunFam Uncharacterized protein 228 377 - -
Vvi12g0186 1344 FunFam Inactive leucine-rich repeat receptor-like protein kinase 698 992 - -
Vvi12g0186 1344 FunFam Leucine-rich repeat receptor protein kinase EMS1 129 227 - -
Vvi12g0186 1344 SUPERFAMILY RNI-like 399 688 - -
Vvi12g0186 1344 FunFam Uncharacterized protein 593 691 - -
Vvi12g0186 1344 SMART serkin_6 1064 1343 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0186 Vvi-Chr12 2595170 2599450 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0186 710 965 Receptor kinase-like Gene Family AT3G47570 35.409 8.04e-27 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi12g0186 Pkinase 4.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0186 - K13420 vvi:100254091 2607.02