Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0184 ATGATAGATGTGGCATCAGGGCTAGAGTATCTCCATCATGATTATTCAAATCCTGTGGTTCACTGTGACTTGAAGCCTAGCAATATCTTGTTAGATGATGACATGGTTGCACACATTAGTGATTTTGGCATTGCAAAACTGTTGATGGGAAATGAGTTTATGAAGCGAACCAAAACCTTAGGCACCATAGGCTATATGGCACCAGAGTATGGCTCAGAGGGAATAGTATCCACAAAAGGTGACATATATAGTTATAGGATCATGCTGATGGAAACTTTTGTGAGGAAAAAGCCTACGGATGAAATGTTCATGGAGGAACTAACCTTGAAGAGTTGGGTGGAGTCATCAACCAACAACATAATGGAGGTTATAGATGTCAATCTTCTAATAGAAGAATATGAAAATTTTGCCTTAAAACAAGCTTGTTTTTCTTCCATTAGGACATTAGCTTCGGATTGTACAGCGGAGCCTCCTCAGAAGAGGATTAATATGAAAGATGTGGTGGTTAGACTCAAGAAGATCCTCAATCAAATTACTGATGTAAGGACTCCACAATTAAGAGAAAGAAGGCATGAAGATCAGGTCTCTTTCTTCCACCCTGAGCTTGTTTAA 612 0.3922 MIDVASGLEYLHHDYSNPVVHCDLKPSNILLDDDMVAHISDFGIAKLLMGNEFMKRTKTLGTIGYMAPEYGSEGIVSTKGDIYSYRIMLMETFVRKKPTDEMFMEELTLKSWVESSTNNIMEVIDVNLLIEEYENFALKQACFSSIRTLASDCTAEPPQKRINMKDVVVRLKKILNQITDVRTPQLRERRHEDQVSFFHPELV* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0184 203 ProSitePatterns Serine/Threonine protein kinases active-site signature. 19 31 IPR008271 GO:0004672|GO:0006468
Vvi12g0184 203 Pfam Protein kinase domain 2 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0184 203 SUPERFAMILY Protein kinase-like (PK-like) 1 171 IPR011009 -
Vvi12g0184 203 SMART tyrkin_6 1 171 IPR020635 GO:0004713|GO:0006468
Vvi12g0184 203 Gene3D Transferase(Phosphotransferase) domain 1 1 195 - -
Vvi12g0184 203 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 176 - -
Vvi12g0184 203 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1 183 - -
Vvi12g0184 203 ProSiteProfiles Protein kinase domain profile. 1 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0184 Vvi-Chr12 2567653 2568613 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0184 2 174 Receptor kinase-like Gene Family AT3G47110 40.984 1.01e-39 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi12g0184 Pkinase 2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0184 - K13420 vvi:100267662 333.954