Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0183 ATGGGTCTTGAAGGAACTATTGCACCACAAGTTGGCAACCTCTCCTTTCTTATGAGTCATCTTCGTAATCTGAAGATATTGTCATTTCGAATGAACAACTTAACAGGTTCCATACCAGCCACCATTTTCAACATATCTTCTTTACTCAACATTAGTCTGTCCTACAATAGCCTCTCTGGGAGTCTTCCCATGAATATATGCAACACCAATCCAAAGCTCAAGGAGCTTAATCTTTCATCAAATCATTTGAGTGGACAGATCCCTAATGGTTTAGGCCAATGTATAAAACTTCAAGTAATTTCCTTATCATATAATGAATTCACGGGAAGCATACCAAGAGGAATTGGTGAATTGGTGGAGCTTCGGAGATTGTCTCTCCAGAATAACATAAATAACCTAAAAGGTGAAATCCCCTCTACTTTGTCACATTGTCGAGAGCTCCAAAAGCTATCATTATCATTCAATCAATTCACTGGACGCATTCCAGAAGCCATAGGGAGTTTATCTAATCTGGAAGGATTATATCTTGGTTATAACAAATTGGCAGGTGGAATTCCTAAGGAGATGGGGAATCTTCGTAATTTAAATATTTTGAGCCTAACTTCTAGTGGACTAAGTGGTCCTATTCCTACCGAAATTTTCAATATCTCTTCATTGCAAGAGATTCATTTAAGTAATAATAGCTTTTCTGGGAGTCTTCCAATGGATATCTGCGAACATCTTCCTAATCTCAAAGGGCTTTATCTTGCTATCAATCAGCTCAGTGGAAGCACACCAAGAGAAATTGGCAACTTATCCAAGCTTGAACAGATTTATCTTGGGAGAAATAGCTTCACAGGTACCATTCCACCTTCATTTGGTAATTTAACTGCCTTACAGGATCTTCAATTGGGGGAAAACAATATTCAAGGTAATATCCCCAAGGAGTTGGGGAGTCTCATCAACTTAAAATTCTTGAATCTTGGCCCAAGCAATCTAACGGGGATAGTACCAGAAGCTATTTTTAACATCTCTAAGCTGCCGTCCCTTTCGCTGGTACTAAATCACCTTTCAGGCAGTCTCCCATCAAGTATTGGCACTTGGCTCCCGGATCTTGAAGGGCTTTATATAGGTGGCAATCAATTTAGTGGAATAATTCCATTGTCTATTTTAAACATGTCAAAGCTAACAGTCCTAGACATCAGCGTTAACTTCTTCACTGGATATGTGCCAAAGGATCTAGGTAACTTGAGACGACTCCAATACCTCTCCCTTTCACGAAACCAGTTGAGTAATGAACACTCAGACTCTGAGCTTGCCTTTCTTACATCATTAACGAATTGCAACTCTTTGAGAAATTTGTGGATCAGTGGTAATCCTTTAAAAGGCATTATTCCAAATTCATTAGGGAATCTCTCCATTTCTCTTGAAAGTATTGTCGCGAGTGGCTGCCAACTCAGAGGCACCATCCCTACAGGGATTAGTTATCTAACCAACTTGATCGATTTGAGACTTGATGATAATAACTTGACAGGGTTGATTCCAACATCATCTGGACGGCTACAGAAGCTCCAGGTGTTGTATTTTTCTCAAAACCAAATACACGGGCCCATTCCTAGTGGTCTATGCCATTTGGCAAACTTGGGATTCTTGGATTTGAGTTCCAATAAACTTTCCGGAACAATCCCTGGCTGCTTTGGGAATCTTACTTTACTACGAGGCATCGATCTTCACTCCAATGGACTAGCTTCTGAGGTACCTTCATCTCTGTGGACCCTTAGAGATCTCTTGGTTCTTAACTTGTCTTCAAACTTCCTCAACAGCCAATTGCCTCTAGAAGTTGGAAACATGAAGTCTTTAGTGGTATTGGACCTGTCAAAGAACCAATTTTCAGGAAACATCCCAAGCACCATATCACTTCTTCAAAACCTGGTCCAACTTCACTTATCCCATAACAAGCTACAGGGTCATATGCCCCCCAATTTTGGTGATTTGGTGAGCTTGGAATGCTTGGATCTGTCTGGGAACAATTTATCTGGTTCTATTCCCAAGTCATTAGAGGCTCTGAAATATCTCAAATACCTAAATGTTTCTGTCAACAAACTACAACGAGAGATTCCAAACGGAGGACCCTTTGCAAACTTCACTGCTGAATCTTTCATCTCCAACCTAGCACTTTGTGGAGCACCTCGGTTTCAAGTCATGGCATGTGAGAAAGATACTAGAAGGCACACAAAATCACTCCTCTTGAAATGTATTGTGCCACTGGCTGTATCATTATCAATAATAATAGTAGTGGTTCTCTTTGTTCTACGGAAGCAAAGACAGACTAAATCAGAAGCACTGCAGGTTCAAGTTGATTTGACATTGCTTCCCAGAATGCGTCCAATGATTTCACATCAAGAACTCCTTTATGCAACCAACTATTTTGATGAAGAGAATTTGATTGGGAAAGGAAGCTTAGGAATGGTATATAAAGGGGTGTTATCCGATGGGTTGATTGTTGCTGTAAAGGTTTTCAATGTGGAATTGCAAGGAGCTTTCAAGAGTTTTGAGGTAGAATATGAAGTAATGCAGAATATTCGGCATAGAAATCTTGCCAAGATAACCAGTAGTTGCTACAACTTGGACTTCAAAGCCTTGGTGCTTGAGTATATGCCTAATGGGAGCTTAGAGAAGTGGTTGTACTCTCACAACTACTTCTTGGATTTTGTCCAATGA 2700 0.4015 MGLEGTIAPQVGNLSFLMSHLRNLKILSFRMNNLTGSIPATIFNISSLLNISLSYNSLSGSLPMNICNTNPKLKELNLSSNHLSGQIPNGLGQCIKLQVISLSYNEFTGSIPRGIGELVELRRLSLQNNINNLKGEIPSTLSHCRELQKLSLSFNQFTGRIPEAIGSLSNLEGLYLGYNKLAGGIPKEMGNLRNLNILSLTSSGLSGPIPTEIFNISSLQEIHLSNNSFSGSLPMDICEHLPNLKGLYLAINQLSGSTPREIGNLSKLEQIYLGRNSFTGTIPPSFGNLTALQDLQLGENNIQGNIPKELGSLINLKFLNLGPSNLTGIVPEAIFNISKLPSLSLVLNHLSGSLPSSIGTWLPDLEGLYIGGNQFSGIIPLSILNMSKLTVLDISVNFFTGYVPKDLGNLRRLQYLSLSRNQLSNEHSDSELAFLTSLTNCNSLRNLWISGNPLKGIIPNSLGNLSISLESIVASGCQLRGTIPTGISYLTNLIDLRLDDNNLTGLIPTSSGRLQKLQVLYFSQNQIHGPIPSGLCHLANLGFLDLSSNKLSGTIPGCFGNLTLLRGIDLHSNGLASEVPSSLWTLRDLLVLNLSSNFLNSQLPLEVGNMKSLVVLDLSKNQFSGNIPSTISLLQNLVQLHLSHNKLQGHMPPNFGDLVSLECLDLSGNNLSGSIPKSLEALKYLKYLNVSVNKLQREIPNGGPFANFTAESFISNLALCGAPRFQVMACEKDTRRHTKSLLLKCIVPLAVSLSIIIVVVLFVLRKQRQTKSEALQVQVDLTLLPRMRPMISHQELLYATNYFDEENLIGKGSLGMVYKGVLSDGLIVAVKVFNVELQGAFKSFEVEYEVMQNIRHRNLAKITSSCYNLDFKALVLEYMPNGSLEKWLYSHNYFLDFVQ* 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0183 899 ProSiteProfiles Leucine-rich repeat profile. 660 683 IPR001611 GO:0005515
Vvi12g0183 899 Gene3D Ribonuclease Inhibitor 321 428 IPR032675 -
Vvi12g0183 899 SUPERFAMILY L domain-like 442 723 - -
Vvi12g0183 899 Gene3D Phosphorylase Kinase; domain 1 763 878 - -
Vvi12g0183 899 ProSiteProfiles Protein kinase domain profile. 803 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0183 899 SUPERFAMILY RNI-like 17 327 - -
Vvi12g0183 899 SMART LRR_sd22_2 241 267 - -
Vvi12g0183 899 SMART LRR_sd22_2 538 570 - -
Vvi12g0183 899 SMART LRR_sd22_2 514 537 - -
Vvi12g0183 899 SMART LRR_sd22_2 658 690 - -
Vvi12g0183 899 SMART LRR_sd22_2 168 194 - -
Vvi12g0183 899 SMART LRR_sd22_2 21 47 - -
Vvi12g0183 899 SMART LRR_sd22_2 610 639 - -
Vvi12g0183 899 SMART LRR_sd22_2 410 434 - -
Vvi12g0183 899 SUPERFAMILY L domain-like 319 465 - -
Vvi12g0183 899 Gene3D Ribonuclease Inhibitor 1 320 IPR032675 -
Vvi12g0183 899 Gene3D Ribonuclease Inhibitor 429 739 IPR032675 -
Vvi12g0183 899 PRINTS Leucine-rich repeat signature 541 554 - -
Vvi12g0183 899 PRINTS Leucine-rich repeat signature 658 671 - -
Vvi12g0183 899 FunFam Inactive leucine-rich repeat receptor-like protein kinase 436 730 - -
Vvi12g0183 899 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 72 308 - -
Vvi12g0183 899 ProSiteProfiles Leucine-rich repeat profile. 72 94 IPR001611 GO:0005515
Vvi12g0183 899 FunFam Suppressor of npr1-1 constitutive 4 768 878 - -
Vvi12g0183 899 SMART LRR_typ_2 514 537 IPR003591 -
Vvi12g0183 899 SMART LRR_typ_2 241 264 IPR003591 -
Vvi12g0183 899 SMART LRR_typ_2 538 561 IPR003591 -
Vvi12g0183 899 SMART LRR_typ_2 168 192 IPR003591 -
Vvi12g0183 899 SMART LRR_typ_2 658 682 IPR003591 -
Vvi12g0183 899 SMART LRR_typ_2 216 240 IPR003591 -
Vvi12g0183 899 SMART LRR_typ_2 71 94 IPR003591 -
Vvi12g0183 899 SMART LRR_typ_2 289 313 IPR003591 -
Vvi12g0183 899 SMART LRR_typ_2 265 288 IPR003591 -
Vvi12g0183 899 SMART LRR_typ_2 490 513 IPR003591 -
Vvi12g0183 899 SMART LRR_typ_2 410 433 IPR003591 -
Vvi12g0183 899 SMART LRR_typ_2 634 657 IPR003591 -
Vvi12g0183 899 SMART LRR_typ_2 21 45 IPR003591 -
Vvi12g0183 899 SMART LRR_typ_2 586 610 IPR003591 -
Vvi12g0183 899 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 436 891 - -
Vvi12g0183 899 Pfam Protein kinase domain 804 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0183 899 Pfam Leucine Rich Repeat 443 465 IPR001611 GO:0005515
Vvi12g0183 899 SUPERFAMILY Protein kinase-like (PK-like) 784 895 IPR011009 -
Vvi12g0183 899 FunFam Uncharacterized protein 330 429 - -
Vvi12g0183 899 Pfam Leucine rich repeat 145 202 IPR001611 GO:0005515
Vvi12g0183 899 Pfam Leucine rich repeat 636 695 IPR001611 GO:0005515
Vvi12g0183 899 Pfam Leucine rich repeat 71 129 IPR001611 GO:0005515
Vvi12g0183 899 Pfam Leucine rich repeat 492 551 IPR001611 GO:0005515
Vvi12g0183 899 Pfam Leucine rich repeat 365 423 IPR001611 GO:0005515
Vvi12g0183 899 Pfam Leucine rich repeat 218 277 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0183 Vvi-Chr12 2562362 2567643 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0183 145 889 Receptor kinase-like Gene Family AT3G47570 36.862 7.86e-130 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi12g0183 Pkinase 2.3e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0183 - K13420 vvi:100267662 1322.38