Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0182 ATGAGCTTGTTCAGATTTCTGGAGAACCCTCCCTTGTTAGGAAGGCTCTTTATCAAATGGCATCTCGTCTTCATGACAATCCTTCCCGATCTTGAAAACCTCGTCAACGAGCAGGTGTCTTCACAAACATACTCCTTGGATGCAAATCTTTGCCTTCTCCGCCTCTACCAATTTGAGCCAGAGCGAATGAGTACCCAAATCGTTGCTCAGATTTTGGTGAAGGCCCTTATGGCAATGCCAGCTCCAGATTTCAGCCTGTCTCTTTTTAATTCCAGAACGAGTGCAAATGGAGGAATAGTTTTAAGACTTCGATTGTTCTCTCACATTATTTGGAGACAGCAAGGTTCCGTCAGTTCTGGGATGAAGCAGCTAAGAATTGACACATAG 387 0.4444 MSLFRFLENPPLLGRLFIKWHLVFMTILPDLENLVNEQVSSQTYSLDANLCLLRLYQFEPERMSTQIVAQILVKALMAMPAPDFSLSLFNSRTSANGGIVLRLRLFSHIIWRQQGSVSSGMKQLRIDT* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0182 128 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 26 88 IPR009374 GO:0003743|GO:0005737|GO:0005852
Vvi12g0182 128 Gene3D ARM repeat; domain 1 24 102 IPR016020 GO:0003743|GO:0005852|GO:0006446|GO:0043022
Vvi12g0182 128 SUPERFAMILY ARM repeat 27 88 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0182 Vvi-Chr12 2552382 2552768 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0182 27 89 Eukaryotic Initiation Factors Gene Family AT4G33250 82.540 1.70e-29 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0182 K15028 - nnu:104609316 119.012