Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0178 ATGGATATTTGCAAACATCTTCCTAATCTCCAAGGGCCCTATCTTGATGGGAATCAGCTCAGTGGTCAACTTCCTGCAACTCTGTCCTTATGTGGAGAGCTTTTGTCACTATCACTATTTTACAACAAATTCGCAGGAAGCATACCAAGAGAAATTGGCAACTTATCCAAGCTTGAATATATTAATCTCAGAAGGAATAGCTTCGCAGGTAGCATTCCACCTTCATTTGGTAATATCCCCAAGGAGTTGGGGAATCTCATCAACTTACAATTCTTGGATCTTTGCGACAACAATTTAATGGGGATAGTACCAGAAGCTATTTTTAACATCTCTAAGCTGCAGATCCTTTCGCTGGTACTAAATCACCTTTCAGGCAGTCTCCCATCAGGTATTGGCACTTGGCTCCCGGATCTTGAAGGGCTTTATATAGGTGCCAATCAATTTAGTGGAATAATTCCATTGTCTATTTCAAATTGGCTCCACCTTTCAGGAAACCAATTGACTGATGAACACTCAACCTCTGAGCTTGCCTTTCTTACATCATTAACGAATTGCAACTCTTTGAGAAAATTTATTTACGCGGGGTTCATTCCAACATCATCTGGACTCCTACAGAAGCTGCAGTTTTTAGCTATCCCTGGAAATCGAATACACGGATCCATTCCTCGTGGTCTATGCCATTTGACAAACTTGGGATACTTGGATTTGAGTTCGAATAAACTTCCTGGAACAATCCCTAGCTACTTTGGGAATCTTACTAGACTGCGGAACATCTACTCCAGTGGACTAGCTCCTGAGATACCTTCATCTCTGTGGACCCTTAGAGATCACTTGATTCTTAACTTGTCTTCAAACTTCCTCAACAGCCAACTACCCCTGGAAGTTGGGAACATGAAGTCCTTACTGGTATTGGACCTGTCAAAGAACCAATTTTCAGGAAACATCCCAAGCACCATATCACTTCTTCAAAACCTGCTCCAACTTTTCCTATCCCATAACAAGCTACAAGGTCATATGCCCCCCAATCTTGAGGCTCTGAAATATCTCAAATACCTAAATGTTTCTTTCAATAAAGTACAAGGAGAGATTCCAAACGGAGGACCCTTTGCAAACTTCACTGCTGAATCTTTCATCTCCAACCTAGCACTTTGTGGAGCACCTCGATTTCAAGTCATGGTACTTGAGAAAGATACTAGAAGGAACACAAAATCACTCCTCTTGAAATGTATTGTCCCTCTGAGTGTATCATTATCAGCAATAATATTAGTGATTCTCTTTATTCTATGGAAGCGAAGACACACCAAGTCAGGAACTCCGGTTCAAGTTGATTTGCCGCTTCCCAGAATGCATAGAATGATTCCACATCAAGAACTCCTTTATGCAACCAGCTACTTTGGTGAAGACAATTTGATTGGAAAAGGAAGCTTAGGAATGGTATATAAAGGGGTACTATCCGATGGGTTGATTGTTGCTGTGAAGGTTTTCAATTTGGAATTGCAGGGAGCTTTCAAGAGTTTTGAGGTAGAATGTGAAGTAATGCGGAATATTCGCCATCGAAATCTTGCCAAGATAATTAGTAGTTGCTCCAACTTGGACTTCAAAGCGTTGGTGCTTGAGTATATGCCTAATGGGAGCTTAGAGAAGTGGTTGTACTCTCACAAATACTACTTGGATTTTGTCCAACGATTAAAAATTATGATAGATGTGGCATCAGGGTTGGAGTATCTCCATCATGATTACTCAAATCCTGTGGTTCACTGTGACTTGAAGCCCAGCAATGTCTTGTTAGATGATGACATGGTTGCACACATAAGTGATTTCGGCATTGCAAAACTGTTGATTGGAAATGAGTTTATGAAGCGAACCAAAACCTTGGGCACCATAGGCTATATGGCACCAGAGTATGGCTCAGAGGGAATAGCATCCACAAAAGGTGACATATATAGTTATGGGATCATGCTGATGGAAACTTTTGTTGGGAAGAAGCCTACTGATGAAATGTTCATGGAGGAACTAACCTTGAAGAGTTGGGTGGAGTCATCAACCAACAACATAATGGAGGTTATAGATGCCAATCTCCTGACAAAAGAAGATGAAAGTTTTGCCTTAAAACAAGCTTGTTTTTCTTCCATCATGACATTAGCTTTAGATTGTGCAGCTGAGCCTCCTGAGAAGAGGATTAACATGAAAGATGTGGTGGTTAGACTCAAGAAGCTCTTGAATCAAATTGACTGCACTGTCGTTGCCCCTGCTTGCCCTCCACGCACTTTTTTCCAAGGAGGTGGTTTCCGACCAATCTCTTTCTTCTTGAATACACCATTATATCGTGATATGCGGGCAGATCCATATGCAAATTGA 2358 0.4122 MDICKHLPNLQGPYLDGNQLSGQLPATLSLCGELLSLSLFYNKFAGSIPREIGNLSKLEYINLRRNSFAGSIPPSFGNIPKELGNLINLQFLDLCDNNLMGIVPEAIFNISKLQILSLVLNHLSGSLPSGIGTWLPDLEGLYIGANQFSGIIPLSISNWLHLSGNQLTDEHSTSELAFLTSLTNCNSLRKFIYAGFIPTSSGLLQKLQFLAIPGNRIHGSIPRGLCHLTNLGYLDLSSNKLPGTIPSYFGNLTRLRNIYSSGLAPEIPSSLWTLRDHLILNLSSNFLNSQLPLEVGNMKSLLVLDLSKNQFSGNIPSTISLLQNLLQLFLSHNKLQGHMPPNLEALKYLKYLNVSFNKVQGEIPNGGPFANFTAESFISNLALCGAPRFQVMVLEKDTRRNTKSLLLKCIVPLSVSLSAIILVILFILWKRRHTKSGTPVQVDLPLPRMHRMIPHQELLYATSYFGEDNLIGKGSLGMVYKGVLSDGLIVAVKVFNLELQGAFKSFEVECEVMRNIRHRNLAKIISSCSNLDFKALVLEYMPNGSLEKWLYSHKYYLDFVQRLKIMIDVASGLEYLHHDYSNPVVHCDLKPSNVLLDDDMVAHISDFGIAKLLIGNEFMKRTKTLGTIGYMAPEYGSEGIASTKGDIYSYGIMLMETFVGKKPTDEMFMEELTLKSWVESSTNNIMEVIDANLLTKEDESFALKQACFSSIMTLALDCAAEPPEKRINMKDVVVRLKKLLNQIDCTVVAPACPPRTFFQGGGFRPISFFLNTPLYRDMRADPYAN* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0178 785 SMART serkin_6 465 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0178 785 Gene3D Phosphorylase Kinase; domain 1 429 540 - -
Vvi12g0178 785 Pfam Leucine Rich Repeat 230 252 IPR001611 GO:0005515
Vvi12g0178 785 Pfam Leucine Rich Repeat 57 78 IPR001611 GO:0005515
Vvi12g0178 785 SMART LRR_typ_2 228 251 IPR003591 -
Vvi12g0178 785 SMART LRR_typ_2 86 109 IPR003591 -
Vvi12g0178 785 SMART LRR_typ_2 7 31 IPR003591 -
Vvi12g0178 785 SMART LRR_typ_2 55 78 IPR003591 -
Vvi12g0178 785 SMART LRR_typ_2 322 346 IPR003591 -
Vvi12g0178 785 Pfam Protein kinase domain 468 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0178 785 FunFam Serine-threonine protein kinase plant-type 446 540 - -
Vvi12g0178 785 FunFam Uncharacterized protein 1 102 - -
Vvi12g0178 785 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 541 747 - -
Vvi12g0178 785 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 159 396 - -
Vvi12g0178 785 Gene3D Ribonuclease Inhibitor 184 399 IPR032675 -
Vvi12g0178 785 Gene3D Ribonuclease Inhibitor 1 78 IPR032675 -
Vvi12g0178 785 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 195 739 - -
Vvi12g0178 785 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672|GO:0006468
Vvi12g0178 785 SUPERFAMILY Protein kinase-like (PK-like) 440 736 IPR011009 -
Vvi12g0178 785 SUPERFAMILY L domain-like 160 387 - -
Vvi12g0178 785 Gene3D Ribonuclease Inhibitor 79 183 IPR032675 -
Vvi12g0178 785 SUPERFAMILY L domain-like 6 183 - -
Vvi12g0178 785 ProSiteProfiles Protein kinase domain profile. 465 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0178 785 Gene3D Transferase(Phosphotransferase) domain 1 541 748 - -
Vvi12g0178 785 CDD STKc_IRAK 471 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0178 Vvi-Chr12 2525808 2529932 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0178 14 736 Receptor kinase-like Gene Family AT3G47570 34.205 7.93e-141 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi12g0178 Pkinase 3.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0178 - K13420 vvi:100262504 1013.83