Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0177 ATGCATCTCTTTTCACCTTATGTTTTAGTGTTTGTTTTAGTGCATTGTTGGGTGGCTTACTTCACTCCCAAAGTATTCTCCATCAATTTAGTTGATGAATTTGCTCTTATGGCCTTGAAAGCCCATATCACATATGATTCCCAAGGCATTTTGGTAACAAATTGGTCAACCAAAAGCTCCTACTGCACTTGGTATGGTATTTCTTGCAATGCTCCTCAGCAAAGAGTTTCTGCAATCAACCTCTCTAACATGGGTCTTGAAGGAACTATTGCGCCACAAGTCGGCAACCTCTCATTTCTTATTTCTCTTGATCTTAGCAATAACTACTTCCATGCCTTTCTTCCTAAGGAAATTGGTAAGTGCAAGGAGCTTCAACAGTTGAATTTATTCAACAATAATCTGGTTGGAAGCATTCCAGAAGCCATTTGTAATTTATCAAAACTTGAAGAGCTGTATCTTGGCAACAATAAGTTGGCTGGTGAAATTCCAAAGAAGATGAGTGATCTTCTTAATCTGAAGATATTGTCATTCCCAATGAACAACTTAACAGGTTCCATACCAGCCACTATTTTCAACATATCTTCTTTGCTCAATATTAGTCTCTCCTATAATAGTCTCTCTGGGAATCTTCCCATGGTTATGTGCAATACCAATCCAAAGCTCAAGGAGCTTAATCTTTCATCAAATCACCTGAGTGGAGAGATCCCCACCAGTTTAAGCCAATGTATAAAGCTTCAAGTAATTTCCTTATCATATAATGAATTCACGGGAAGCATACCAAAAGGAATTGGTAACTTGGTGGAGCTTCAGAGATTGTCTTTCAGGAATAATAACTTGATAGGAGAAATACCTCAATCACTGTTCAACATATCTTCATTGAGGTTTTTGAATCTGGCAGCCAATCAACTCGAAGGTGAAATCCCCTCCAACTTGTCGCATTGTCGAGAGCTCCGAGTACTATCATTATCATTAAATCAGTTTACTGGAGGCATTCCACAAGCCATAGGGAGTTTATCGAATCTTGAAGAATTATATCTTGGTTATAACAATTTGGGAGGTGGAATTCCTAGCGAGATTGGGAATCTTCATAATTTAAATATTTTGAACTTCGAGTCTGCTAGACTAAGTGGTCCTATTCCTGCCCAAATTTTCAACATCTCTTCGTTGCAAGTTATTGCTTTTAGTAATAATAGCCTTTCTGGGAGTCTTCCAATAGATATCTGCAAACATCTTCCTAATCTCCAAAGGCTCCACCTTTCTTGGAATCAGCTCAGTGGCCAACTTCCTACAACCCTGTCCTTATGTGGAGAGCTTCTGTCACTGTCACTATATTACAACAAATACGCAGGAAGCATAATAAGAGAAATTGGCAACTTATCCAAGCTTGAACAGATTTATCTTGGGAGGAATAACTTCACAAGTACCATTCCACCTTCATTTGGTAATTTAACTGCCATACAGGAGCTTGGATTGGAGGAAAACAATTTTCAAGGTAATATCCCCAAGGAGTTGGGGAAACTCATCAACTTACAAATATTGCATCTTGGCCAAAACAATCTAACGGGGATTGTACCAGAAGCTATTATCAACATCTCTAAGCTGCAGGTCCTTTCGCTATCACTAAATCACCTCTCAGGCAGTCTCCCATCAAGTATTGGCACTTGGCTTCCAAATCTTGAAGGACTTTATATAGGAGCCAATGAATTCAGTGGAAAAATTCCGATGTCCATTTCCAATATGTCGAAACTTCTCTTCATGGACATAAGCAACAACTACTTCATTGGGAATTTGCCAAAAGACCTAGGTAACATGAGACGACTCCAGATCCTCAACCTTTCATACAACCAGTTGACTAATGAACAATCAGACTCTGAGCTTGCCTTTTTTACATCATTGACGAATTGCATTTCTTTGAGAAAATTGCGGATCGGTGGTAATCCTTTAAAAGGCATTATTCCAAATTCATTGGGGAATCTCTCCATTTCTATTGAAAGGATTGGAGCGAGAAGCTGCCAACTCAGAGGCACCATCCCTACAGGGGTTAGTAATCTAACCAACTTGATTGGTTTAGGACTTGATGATAATGACTTGACAGGGTTGATTCCAACATCATTTGGACGCCTACAGAAGCTCCAGGCGTTGGGTATTTCTCAAAATCGAATACGCGGATCCATTCCTAGTGATCTATGCCATTTGACAAACTTGGGATTCTTGGATTTGAGTTCGAATAAACTTTCCGGAACAATCCCTAGCTGCTTTGGGAATCTTACTTCACTACGAAGAATCAATCTTCACTCCAATGGACTAGCTTCTGAGATACCTTCATCTCTGTGGATCCTTAGATATCTCTTGTTTCTTAACTTGTCTTCAAACTTCCTCAACGGCGAACTACCCTTAGAAGTTGGAAACATGAAGTCCTTAGAGGAATTGGACCTATCAAAGAACCAATTTTCAGGAAACATCCCCAGCACTATATCACTTCTTCAAAACCTGCTCCAACTTTACCTATCCCATAACAAGCTACAAGGTCATATTCCCCCCAATTTTGATGATTTGGTGAGCTTGGAATACTTGGATCTGTCAGGGAACAATTTATCTGGTTTTATTCCCAAGTCATTAGAGGCTCTGAAATATCTCAAATACCTGAATGTTTCTTTCAATAAACTACAAGGAGAGATTCCAAACGGAGGACCCTTTGCAAACTTCACTGCTGAATCTTTCATCTCCAACCTAGCACTTTGTGGAGCACCTCGGTTTCAAGTCATGGCATGTGAGAAAGATACTAGAAGGAACACAAAATCACTCCTCTTGAAATGTATTGTGCCACTAAGTGTATCATTATCAACAATAATACTAGTGGTTCTCTTTGTTTTATGGAAGCGAAGACAGACTAAGTCAGAAACTCCGGTTCAAGTTGACTTGTTGCTTCCCAGAATGCATAGAATGATTCTACACCAAGAACTCCTTTATGCAACCAGCTACTTCGGAGAAGACAATTTGATTGGGAAAGGAAGCTTAGGCACGGTATATAAAGGGGTATTATCCGATGGGTTGATTGTTGCTGTGAAGGTTTTCAATTTGGAATTGCAGGGAGCTTTCAAGAGTTTTGAGGTAGAATGTGAAGTAATGCAGAATATTCGCCATCGAAATCTTGCCAAGATAATTAGTAGTTGCTCCAATTTGGACTTCAAAGCCTTGGTGCTTGAGTATATGCCTAATGGGAGCTTAGAGAAGTGGTTGTACTCTCACAACTACTACTTGGATTTTGTCCAACGATTAAAAATTATGATAGATGTGGCATCAGGGTTAGAGTATCTCCATCATGATTATTCAAGTCCTGTGGTTCACTGTGACTTGAAGCCCAACAATGTCTTATTAGATGATGACATGGTTGCACACATAAGTGATTTCGGCATTGCAAAACTGTTGATGGGAAGCGAGTTTATGAAGCGAACCAAAACCTTGGGCACCATAGGCTATATGGCACCAGAGTATGGCTCAGAGGGAATAGTATCTACAAAATGTGATATATATAGTTTTGGGATCATGCTCATGGAAACTTTTGTGAGGAAGAAGCCTACAGATGAAATGTTTATGGAGGAACTAACCTTGAAGAGTTGGGTGGAGTCATCAACCAACAACATAATGGAGGTTATAGATGCCAATCTCCTGACAGAAGAAGATGAAAGTTTTGCCTTAAAACAAGCTTGTTTTTCTTCCATCATGACATTAGCTCTGAATTGTACAGCTGAGCCTCCTGAGAAAAGGATTAACATGAAAGATACGTTAAGATCACTCACAGCTCTCACTGGTCTCACTGGTGTAACGGCTGCTGTTTGCTGCTATACTTCAGAAGTTGTTGCACTTCTAAAGTTAGGTGGTTTGTTACACTTTGTTAGATTAGTTACACAATGGAAAATTCTACGGCACCGAAGTGGGTACCGCATCTGCAAAATTCTTGTCCGTTGGATCAAAAGCTTCCAATCAAGACTGAATGCCTTTGCACCACTTAGCTGGACTGCGCCATCGTATTGCCTCTTCTTGAATACGCTTTGCTTGATCAACTTTTCAGGTTTCTTTCTCGGTTTTGGTAGGACTGCACTGTCGCTTGACCCGAGGTTAGCTCTTTTGTCCTTTTGGAAAACTGCACCGCAGCTGTCCCTTCTTGACCGGCTCAACCCACTTCTCCAAGAGAGGTTGAGGGTGTCTTCCCTTTTCTACTTCCTCACCCACTTCTTCCAAGAAGTTTGCTACCCACCGATTACTCTCCCTTCCTTAACCCTTGTTTTGTTGAACCACATCCTCTCCTTCAACATTTATCAACGACTTTTTTTTCTTGTTCTTGTTAGATTAATTTTTGGTAATAATCAAAGGTACTACCAGCCCTTATTACAGAAATGCCAATATGCTCTAATATTTAACATCTCTTCTTTACTCAACATTAGTCTGTCCTACAAAAGCCTCTCTGGGAGTCTTCCCATGAATATATGCAACACCAATCCAAAGCTCAAGGAGCTTAATCTTTCGTCAAATCATTTGAGTGGACAGATCCCTATTGGTTTAGGTCAATGTATAAAACTTCAAGTAATTTCCTTATCATATAATGAATTCACGGGAAGCATACCAAGAGGAATTGGTGAATTGGTGGAGCTTCAGAGATTCTCTCCAGAATAA 4674 0.3994 MHLFSPYVLVFVLVHCWVAYFTPKVFSINLVDEFALMALKAHITYDSQGILVTNWSTKSSYCTWYGISCNAPQQRVSAINLSNMGLEGTIAPQVGNLSFLISLDLSNNYFHAFLPKEIGKCKELQQLNLFNNNLVGSIPEAICNLSKLEELYLGNNKLAGEIPKKMSDLLNLKILSFPMNNLTGSIPATIFNISSLLNISLSYNSLSGNLPMVMCNTNPKLKELNLSSNHLSGEIPTSLSQCIKLQVISLSYNEFTGSIPKGIGNLVELQRLSFRNNNLIGEIPQSLFNISSLRFLNLAANQLEGEIPSNLSHCRELRVLSLSLNQFTGGIPQAIGSLSNLEELYLGYNNLGGGIPSEIGNLHNLNILNFESARLSGPIPAQIFNISSLQVIAFSNNSLSGSLPIDICKHLPNLQRLHLSWNQLSGQLPTTLSLCGELLSLSLYYNKYAGSIIREIGNLSKLEQIYLGRNNFTSTIPPSFGNLTAIQELGLEENNFQGNIPKELGKLINLQILHLGQNNLTGIVPEAIINISKLQVLSLSLNHLSGSLPSSIGTWLPNLEGLYIGANEFSGKIPMSISNMSKLLFMDISNNYFIGNLPKDLGNMRRLQILNLSYNQLTNEQSDSELAFFTSLTNCISLRKLRIGGNPLKGIIPNSLGNLSISIERIGARSCQLRGTIPTGVSNLTNLIGLGLDDNDLTGLIPTSFGRLQKLQALGISQNRIRGSIPSDLCHLTNLGFLDLSSNKLSGTIPSCFGNLTSLRRINLHSNGLASEIPSSLWILRYLLFLNLSSNFLNGELPLEVGNMKSLEELDLSKNQFSGNIPSTISLLQNLLQLYLSHNKLQGHIPPNFDDLVSLEYLDLSGNNLSGFIPKSLEALKYLKYLNVSFNKLQGEIPNGGPFANFTAESFISNLALCGAPRFQVMACEKDTRRNTKSLLLKCIVPLSVSLSTIILVVLFVLWKRRQTKSETPVQVDLLLPRMHRMILHQELLYATSYFGEDNLIGKGSLGTVYKGVLSDGLIVAVKVFNLELQGAFKSFEVECEVMQNIRHRNLAKIISSCSNLDFKALVLEYMPNGSLEKWLYSHNYYLDFVQRLKIMIDVASGLEYLHHDYSSPVVHCDLKPNNVLLDDDMVAHISDFGIAKLLMGSEFMKRTKTLGTIGYMAPEYGSEGIVSTKCDIYSFGIMLMETFVRKKPTDEMFMEELTLKSWVESSTNNIMEVIDANLLTEEDESFALKQACFSSIMTLALNCTAEPPEKRINMKDTLRSLTALTGLTGVTAAVCCYTSEVVALLKLGGLLHFVRLVTQWKILRHRSGYRICKILVRWIKSFQSRLNAFAPLSWTAPSYCLFLNTLCLINFSGFFLGFGRTALSLDPRLALLSFWKTAPQLSLLDRLNPLLQERLRVSSLFYFLTHFFQEVCYPPITLPSLTLVLLNHILSFNIYQRLFFLVLVRLIFGNNQRYYQPLLQKCQYALIFNISSLLNISLSYKSLSGSLPMNICNTNPKLKELNLSSNHLSGQIPIGLGQCIKLQVISLSYNEFTGSIPRGIGELVELQRFSPE* 1558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0177 1557 SMART LRR_typ_2 219 242 IPR003591 -
Vvi12g0177 1557 SMART LRR_typ_2 97 121 IPR003591 -
Vvi12g0177 1557 SMART LRR_typ_2 852 875 IPR003591 -
Vvi12g0177 1557 SMART LRR_typ_2 804 827 IPR003591 -
Vvi12g0177 1557 SMART LRR_typ_2 291 314 IPR003591 -
Vvi12g0177 1557 SMART LRR_typ_2 145 169 IPR003591 -
Vvi12g0177 1557 SMART LRR_typ_2 828 851 IPR003591 -
Vvi12g0177 1557 SMART LRR_typ_2 266 290 IPR003591 -
Vvi12g0177 1557 SMART LRR_typ_2 684 707 IPR003591 -
Vvi12g0177 1557 SMART LRR_typ_2 1501 1524 IPR003591 -
Vvi12g0177 1557 SMART LRR_typ_2 732 755 IPR003591 -
Vvi12g0177 1557 SMART LRR_typ_2 507 530 IPR003591 -
Vvi12g0177 1557 SMART LRR_typ_2 604 627 IPR003591 -
Vvi12g0177 1557 SMART LRR_typ_2 756 780 IPR003591 -
Vvi12g0177 1557 SMART LRR_typ_2 411 435 IPR003591 -
Vvi12g0177 1557 SMART LRR_typ_2 338 362 IPR003591 -
Vvi12g0177 1557 SMART LRR_typ_2 531 555 IPR003591 -
Vvi12g0177 1557 SMART LRR_typ_2 459 482 IPR003591 -
Vvi12g0177 1557 SUPERFAMILY Protein kinase-like (PK-like) 971 1266 IPR011009 -
Vvi12g0177 1557 Gene3D Ribonuclease Inhibitor 217 330 IPR032675 -
Vvi12g0177 1557 Gene3D Ribonuclease Inhibitor 331 430 IPR032675 -
Vvi12g0177 1557 Gene3D Ribonuclease Inhibitor 431 525 IPR032675 -
Vvi12g0177 1557 Gene3D Ribonuclease Inhibitor 624 933 IPR032675 -
Vvi12g0177 1557 ProSiteProfiles Protein kinase domain profile. 995 1269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0177 1557 SUPERFAMILY RNI-like 567 895 - -
Vvi12g0177 1557 Pfam Leucine rich repeat 292 351 IPR001611 GO:0005515
Vvi12g0177 1557 Pfam Leucine rich repeat 849 889 IPR001611 GO:0005515
Vvi12g0177 1557 Pfam Leucine rich repeat 219 279 IPR001611 GO:0005515
Vvi12g0177 1557 Pfam Leucine rich repeat 689 745 IPR001611 GO:0005515
Vvi12g0177 1557 Pfam Protein kinase domain 998 1264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0177 1557 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 291 481 - -
Vvi12g0177 1557 FunFam Suppressor of npr1-1 constitutive 4 961 1070 - -
Vvi12g0177 1557 SUPERFAMILY RNI-like 387 620 - -
Vvi12g0177 1557 SMART LRR_sd22_2 732 758 - -
Vvi12g0177 1557 SMART LRR_sd22_2 804 823 - -
Vvi12g0177 1557 SMART LRR_sd22_2 852 873 - -
Vvi12g0177 1557 SMART LRR_sd22_2 338 364 - -
Vvi12g0177 1557 SMART LRR_sd22_2 145 171 - -
Vvi12g0177 1557 SMART LRR_sd22_2 266 292 - -
Vvi12g0177 1557 SMART LRR_sd22_2 507 533 - -
Vvi12g0177 1557 SMART LRR_sd22_2 828 851 - -
Vvi12g0177 1557 Gene3D Ribonuclease Inhibitor 526 623 IPR032675 -
Vvi12g0177 1557 SUPERFAMILY L domain-like 1407 1553 - -
Vvi12g0177 1557 Gene3D Ribonuclease Inhibitor 32 142 IPR032675 -
Vvi12g0177 1557 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Vvi12g0177 1557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1114 1126 IPR008271 GO:0004672|GO:0006468
Vvi12g0177 1557 Pfam Leucine Rich Repeat 637 659 IPR001611 GO:0005515
Vvi12g0177 1557 FunFam Inactive leucine-rich repeat receptor-like protein kinase 630 924 - -
Vvi12g0177 1557 ProSiteProfiles Leucine-rich repeat profile. 606 627 IPR001611 GO:0005515
Vvi12g0177 1557 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 30 182 - -
Vvi12g0177 1557 ProSiteProfiles Leucine-rich repeat profile. 806 828 IPR001611 GO:0005515
Vvi12g0177 1557 Gene3D Ribonuclease Inhibitor 143 216 IPR032675 -
Vvi12g0177 1557 FunFam Leucine-rich repeat protein kinase family protein 482 623 - -
Vvi12g0177 1557 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1473 1553 - -
Vvi12g0177 1557 Gene3D Transferase(Phosphotransferase) domain 1 1071 1275 - -
Vvi12g0177 1557 SUPERFAMILY L domain-like 50 376 - -
Vvi12g0177 1557 Gene3D Ribonuclease Inhibitor 1435 1555 IPR032675 -
Vvi12g0177 1557 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 183 283 - -
Vvi12g0177 1557 PRINTS Leucine-rich repeat signature 852 865 - -
Vvi12g0177 1557 PRINTS Leucine-rich repeat signature 735 748 - -
Vvi12g0177 1557 Gene3D Phosphorylase Kinase; domain 1 957 1070 - -
Vvi12g0177 1557 Pfam Leucine Rich repeat 1499 1515 IPR001611 GO:0005515
Vvi12g0177 1557 Pfam Leucine Rich repeat 410 426 IPR001611 GO:0005515
Vvi12g0177 1557 ProSiteProfiles Leucine-rich repeat profile. 854 877 IPR001611 GO:0005515
Vvi12g0177 1557 SMART serkin_6 995 1269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0177 1557 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1071 1276 - -
Vvi12g0177 1557 ProSiteProfiles Leucine-rich repeat profile. 220 242 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0177 Vvi-Chr12 2513889 2525353 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0177 209 726 Receptor kinase-like Gene Family AT3G47570 31.588 1.41e-61 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi12g0177 Pkinase 8.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0177 - K13420 vvi:100267662 2394.39