Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0176 ATGGATATCTGCAAACATCTTCCTAATCTCCAATGGCTCCTTCTTTCTTTGAATCAGCTCAGTGGTCAACTTCCTACAACTCTGTCCTTATGTGGAGAGCTTCTGACACTGACACTTGCCTATAACAACTTCACTGGAAGCATACCAAGAGAAATTGGCAACTTATCCAAGCTTGAACAGATTTATTTTCGGAGGAGTAGCTTCACAGGTACTATTCCACCGTCATTTGGTAATTTAACCGCCTTACAACATCTTGATTTGGGGGAAAACAATATTCAAGGTAATATCCCGAAGGAGTTGGGGAATTTGGTAAACTTACAATTCTTGAGTCTTAACGTGAACAATCTAACGGGGATAGTACCAGAAGCTATTTTTAACATCTCTAAGCTGCAAGTCCTTTCGTTGGCAGGAAATCACCTTTCAGGCAGTCTCCCATCAAGTATTGGCAGTTGGCTCCCAAATCTTGAACAACTTTTAATAGGAGGCAATGAATTCAGTGGAATAATTCCAATGTCTATTTCAAATATGTCCAACCTTATCAGCCTAGACATATCCGACAACTTCTTCATTGGTAATGTGCCAAAAGATCTAGGTAACTTGAGACAACTCCAGTTGCTCGGCCTTTCACATAACCAGTTGACTAATGAACACTCAGCCTCTGAGCTTGCCTTTCTTACATCATTGACGAATTGCATTTTTTTGAGAACATTGTCGATCAGTGATAATCCCTTAAAAGGCATGATTCCAAATTCATTGGGGAATCTCTCCATTTCTCTCGAAATTATTTACGCAAGTGACTGCCAACTCAGAGGCACCATTCCTACAGGGATTAGTAATCTAACCAACTTGATTGGTTTGAGACTTGATGATAATGACTTGACAGGGTTGATTCCAACACCATTTGGACGCCTACAGAAGCTCCAGATGTTGTCTATTTCTCAAAATCGAATACATGGATCCATTCCTAGTGGTCTATGCCATTTGACAAACTTAGCATTCTTGGATTTGAGTTCAAATAAACTTTCCGGAACAATCCCAAGCTGCTCTGGGAATCTTACTGGACTGCGTAACGTCTATCTTCACTCCAATGGACTAGCTTCTGAGATACCTTCATCCCTGTGCAACCTTAGAGGTCTCTTGGTTCTTAACTTGTCTTCAAACTTCCTCAACAGCCAACTACCCCTACAAGTTGGAAACATGAAGTCCTTAGTGGCATTGGACCTGTCAAAGAACCAATTTTCAGGAAACATCCCAAGCACCATATCACTTCTTCAAAACCTGCTCCAACTTTACCTATCCCATAACAAGCTACAAGGTCACATCCCCCCCAATTTTGGTGATTTGGTGAGCTTGGAATCCTTGGATCTGTCTGGGAACAATTTATCTGGTACTATTCCCAAGTCATTAGAGCATCTGAAATATCTTGAATACCTAAATGTTTCCTTCAATAAACTACAAGGAGAGATTCCAAATGGAGGACCCTTTGCAAACTTCACTGCTGAATCTTTCATCTCCAACCTAGCACTTTGTGGAGCACCTCGGTTTCAAGTCATGGCATGTGAGAAAGATTCCAGAAAGAACACAAAATCACTCCTCTTGAAATGTATTGTGCCACTGAGTGTATCATTATCAACAATAATACTAGTGGTTCTCTTTGTTCAATGGAAGCGAAGACAGACTAAGTCAGAAACTCCAATTCAAGTTGATTTGTCGCTTCCCAGAATGCATAGAATGATTCCACACCAAGAACTCCTTTATGCAACCAACTACTTCGGTGAAGACAATTTGATTGGGAAAGGAAGCTTAGGCATGGTATATAAAGGGGTATTATCTGATGGGTTGATTGTTGCTGTGAAGGTTTTCAATTTGGAATTGCAGGGAGCTTTCAAGAGTTTTGAGGTAGAATGTGAAGTAATGCGGAATATTCGCCATCGAAATCTTGCCAAGATAATTAGTAGTTGCTCCAATTTGGACTTCAAAGCCTTGGTGCTTGAGTATATGCCTAATGGGAGCTTAGAGAAGTGGTTGTACTCCCACAACTACTACTTGGATTTTGTCCAACGATTGAAAATTATGATAGATGTGGCATCAGGGTTAGAGTATCTCCATCATTATTATTCAAATCCTGTGGTTCACTGTGACTTGAAGCCTAGCAATGTCTTGTTAGATGATGACATGGTTGCACACATAAGTGATTTCGGCATTGCAAAACTGTTGATGGGAAGTGAGTTTATGAAGCGAACCAAAACCTTGGGCACCGTAGGCTATATGGCACCAGAGTATGGCTCAGAGGGAATAGTATCCACAAAAGGTGATATATATAGTTATGGGATCCTGTTGATGGAAACTTTTGTGAGGAAGAAGCCTACAGATGAAATGTTCGTGGAGGAACTAACCTTGAAGAGTTGGGTGGAGTCATCAACCAACAACATAATGGAGGTTATAGATGCCAATCTCCTGACAGAAGAGGATGAAAGTTTTGCCTTAAAACGAGCTTGTTTTTCTTCTATCATGACATTAGCTCTGGATTGTACGGTTGAGCCTCCTGAGAAGAGGATTAACACGAAAGATGTGGTGGTTAGACTCAAAAAGCTTCTGAATCAAATTGATGTTTTAAGAACTCCATAA 2628 0.4056 MDICKHLPNLQWLLLSLNQLSGQLPTTLSLCGELLTLTLAYNNFTGSIPREIGNLSKLEQIYFRRSSFTGTIPPSFGNLTALQHLDLGENNIQGNIPKELGNLVNLQFLSLNVNNLTGIVPEAIFNISKLQVLSLAGNHLSGSLPSSIGSWLPNLEQLLIGGNEFSGIIPMSISNMSNLISLDISDNFFIGNVPKDLGNLRQLQLLGLSHNQLTNEHSASELAFLTSLTNCIFLRTLSISDNPLKGMIPNSLGNLSISLEIIYASDCQLRGTIPTGISNLTNLIGLRLDDNDLTGLIPTPFGRLQKLQMLSISQNRIHGSIPSGLCHLTNLAFLDLSSNKLSGTIPSCSGNLTGLRNVYLHSNGLASEIPSSLCNLRGLLVLNLSSNFLNSQLPLQVGNMKSLVALDLSKNQFSGNIPSTISLLQNLLQLYLSHNKLQGHIPPNFGDLVSLESLDLSGNNLSGTIPKSLEHLKYLEYLNVSFNKLQGEIPNGGPFANFTAESFISNLALCGAPRFQVMACEKDSRKNTKSLLLKCIVPLSVSLSTIILVVLFVQWKRRQTKSETPIQVDLSLPRMHRMIPHQELLYATNYFGEDNLIGKGSLGMVYKGVLSDGLIVAVKVFNLELQGAFKSFEVECEVMRNIRHRNLAKIISSCSNLDFKALVLEYMPNGSLEKWLYSHNYYLDFVQRLKIMIDVASGLEYLHHYYSNPVVHCDLKPSNVLLDDDMVAHISDFGIAKLLMGSEFMKRTKTLGTVGYMAPEYGSEGIVSTKGDIYSYGILLMETFVRKKPTDEMFVEELTLKSWVESSTNNIMEVIDANLLTEEDESFALKRACFSSIMTLALDCTVEPPEKRINTKDVVVRLKKLLNQIDVLRTP* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0176 875 SMART serkin_6 591 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0176 875 SUPERFAMILY Protein kinase-like (PK-like) 566 862 IPR011009 -
Vvi12g0176 875 ProSiteProfiles Leucine-rich repeat profile. 450 473 IPR001611 GO:0005515
Vvi12g0176 875 PANTHER OS04G0122200 PROTEIN 101 864 - -
Vvi12g0176 875 FunFam Serine-threonine protein kinase plant-type 572 666 - -
Vvi12g0176 875 Gene3D Ribonuclease Inhibitor 2 93 IPR032675 -
Vvi12g0176 875 Gene3D Ribonuclease Inhibitor 94 226 IPR032675 -
Vvi12g0176 875 SMART LRR_sd22_2 79 98 - -
Vvi12g0176 875 SMART LRR_sd22_2 328 354 - -
Vvi12g0176 875 SMART LRR_sd22_2 448 480 - -
Vvi12g0176 875 SMART LRR_sd22_2 304 327 - -
Vvi12g0176 875 SMART LRR_sd22_2 103 129 - -
Vvi12g0176 875 PRINTS Leucine-rich repeat signature 331 344 - -
Vvi12g0176 875 PRINTS Leucine-rich repeat signature 448 461 - -
Vvi12g0176 875 ProSiteProfiles Protein kinase domain profile. 591 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0176 875 Pfam Leucine rich repeat 426 485 IPR001611 GO:0005515
Vvi12g0176 875 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
Vvi12g0176 875 Pfam Leucine rich repeat 285 341 IPR001611 GO:0005515
Vvi12g0176 875 Pfam Leucine rich repeat 57 116 IPR001611 GO:0005515
Vvi12g0176 875 Pfam Leucine Rich Repeat 234 255 IPR001611 GO:0005515
Vvi12g0176 875 Gene3D Transferase(Phosphotransferase) domain 1 667 872 - -
Vvi12g0176 875 Gene3D Phosphorylase Kinase; domain 1 552 666 - -
Vvi12g0176 875 SUPERFAMILY RNI-like 133 491 - -
Vvi12g0176 875 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 2 229 - -
Vvi12g0176 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 710 722 IPR008271 GO:0004672|GO:0006468
Vvi12g0176 875 SMART LRR_typ_2 103 126 IPR003591 -
Vvi12g0176 875 SMART LRR_typ_2 127 151 IPR003591 -
Vvi12g0176 875 SMART LRR_typ_2 200 223 IPR003591 -
Vvi12g0176 875 SMART LRR_typ_2 328 352 IPR003591 -
Vvi12g0176 875 SMART LRR_typ_2 448 472 IPR003591 -
Vvi12g0176 875 SMART LRR_typ_2 152 175 IPR003591 -
Vvi12g0176 875 SMART LRR_typ_2 79 102 IPR003591 -
Vvi12g0176 875 SMART LRR_typ_2 424 447 IPR003591 -
Vvi12g0176 875 SMART LRR_typ_2 376 400 IPR003591 -
Vvi12g0176 875 SMART LRR_typ_2 7 31 IPR003591 -
Vvi12g0176 875 SMART LRR_typ_2 280 303 IPR003591 -
Vvi12g0176 875 SMART LRR_typ_2 304 327 IPR003591 -
Vvi12g0176 875 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 667 873 - -
Vvi12g0176 875 Pfam Protein kinase domain 594 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0176 875 FunFam Inactive leucine-rich repeat receptor-like protein kinase 230 520 - -
Vvi12g0176 875 Gene3D Ribonuclease Inhibitor 227 521 IPR032675 -
Vvi12g0176 875 SUPERFAMILY L domain-like 6 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0176 Vvi-Chr12 2503190 2506190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0176 6 862 Receptor kinase-like Gene Family AT3G47570 39.391 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi12g0176 Pkinase 8.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0176 - K13420 vvi:100262504 1655.19