Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0173 ATGGTGCAGGCTGTGATTAGAGAGCCACGAATGGGTGCTTCGATTCTTCGCTTGTTCTTTCATGATTGTTTCGTGAATGGCTGTGATGCATCAATACTACTGGACGATACAGCCACATTCACTGGAGAAAAGAATGCTCTTCCGAACCAGAACTCAGTTAGGGGTTTTGAAGTAATTGACACCATTAAAACCCGAGTTGAGGCTGCTTGCAAAGCCACGGTATCTTGTGCAGACATCCTGGCACTAGCAGCACGCGATGGAGTCGTCTTGCTTGGAGGACCTTCTTGGACAGTACCACTTGGGAGAAGAGATGCAAGAACGGCCAACCAGAGTGCAGCAAACAACGATCTTCCAGCGCCATTTGCTAACCTCTCAGCCCTCATCTCCGGTTTTGCTGCCAAAGGTCTAAATGCCGATGATATGACCGCTCTGTCAGGTAGCCATACAATAGGCCAAGCTCAGTGCTTCACTTTCCGCTCCCGCATCTACAACGACACCAATATCGACCCCAACTTTGCTGCCACCCGAAGATCTACATGCCCAGTTTCAGGCGGAAACTCCAACTTGGCCCCCCTTGATATACAGACCATGAACAAGTTTGATAACAATTACTACCAAAACCTTATGACTCAGCGTGGGCTTCTCCATTCAGACCAGGAGCTGTTCAACGGTGGGTCTCAGGATGCTTTGGTTAGGACCTATAGTGCTAATAATGCCTTGTTTTTCGGAGATTTCGCTGCTGCTATGGTGAAGATGAGCAATATCAGCCCGCTCACTGGAACAAATGGCGAGATCAGAAGCAACTGCAGGGTGGTGAATTGA 822 0.4878 MVQAVIREPRMGASILRLFFHDCFVNGCDASILLDDTATFTGEKNALPNQNSVRGFEVIDTIKTRVEAACKATVSCADILALAARDGVVLLGGPSWTVPLGRRDARTANQSAANNDLPAPFANLSALISGFAAKGLNADDMTALSGSHTIGQAQCFTFRSRIYNDTNIDPNFAATRRSTCPVSGGNSNLAPLDIQTMNKFDNNYYQNLMTQRGLLHSDQELFNGGSQDALVRTYSANNALFFGDFAAAMVKMSNISPLTGTNGEIRSNCRVVN* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0173 273 ProSitePatterns Peroxidases active site signature. 12 23 IPR019794 GO:0004601
Vvi12g0173 273 Pfam Peroxidase 4 236 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0173 273 Gene3D Peroxidase, domain 2 118 252 - -
Vvi12g0173 273 SUPERFAMILY Heme-dependent peroxidases 2 273 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi12g0173 273 ProSitePatterns Peroxidases proximal heme-ligand signature. 140 150 IPR019793 -
Vvi12g0173 273 ProSiteProfiles Plant heme peroxidase family profile. 1 273 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0173 273 CDD secretory_peroxidase 1 272 IPR033905 GO:0004601|GO:0042744
Vvi12g0173 273 FunFam Peroxidase 118 252 - -
Vvi12g0173 273 PANTHER PEROXIDASE 72-RELATED 2 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0173 273 FunFam Peroxidase 1 125 - -
Vvi12g0173 273 PRINTS Haem peroxidase superfamily signature 12 26 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0173 273 PRINTS Haem peroxidase superfamily signature 92 104 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0173 273 PRINTS Haem peroxidase superfamily signature 140 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0173 273 PRINTS Haem peroxidase superfamily signature 193 208 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0173 273 PRINTS Haem peroxidase superfamily signature 74 91 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0173 273 PRINTS Plant peroxidase signature 247 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0173 273 PRINTS Plant peroxidase signature 54 67 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0173 273 PRINTS Plant peroxidase signature 191 206 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0173 273 PRINTS Plant peroxidase signature 139 151 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0173 273 PRINTS Plant peroxidase signature 14 34 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0173 273 PRINTS Plant peroxidase signature 73 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0173 273 PRINTS Plant peroxidase signature 207 224 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0173 273 PRINTS Plant peroxidase signature 92 107 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0173 273 Gene3D - 3 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0173 Vvi-Chr12 2459854 2461374 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0173 4 269 Peroxidase AT5G05340 68.284 3.08e-132 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0173 K00430 - vvi:100259249 547.354