Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0171 ATGGCCTCGCTGCCTCTGGGTCCTCAAACCCACCACCACCACCACCACCTTCCGCCGGAACACGACCCTCTCAAACCTCCTTTCCGCCGCCCCGACCACCTCGACTCCGACAAGGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATAATTTCCACCACCATTGGAGGCAAAAATGGAGAGCCTAAACAGACCATCAGTTACATGGCAGAGCGCATTGTAGGCACTGGATCGTTTGGAATTGTTTTTCAGGCAAAATGCTTGGAAACTGGAGAAACTGTCGCAATAAAAAAGGTCTTACAAGACAGGCGGTATAAAAATCGTGAGCTGCAGTTATTGCGCTTGATGGATCACCCAAATGTGGTCACCCTGAAGCACTGCTTCTTTTCCACAACAAGTAGAGATGAACTTTTTCTGAATTTGGTAATGGAATATGTTCCTGAGACTATGTACCGGGTCTTGAAGCATTATAGCAATGCTAACCAGAGGATGCCTCTCATATATGTCAAACTTTATACATATCAAATTTTTAGGGGGCTGGCCTATATTCATACAGTGCCTGGGGTTTGCCATAGGGATGTGAAGCCTCAAAATGTTCTGGTTGATCCTCTCACCCATCAGGTTAAGCTTTGTGATTTTGGAAGTGCAAAGGTTCTGGTCAAGGGTGAAGCAAACATATCATACATTTGTTCTCGCTACTACCGGGCCCCAGAACTTATATTTGGTGCAACTGAATACACAACATCGATTGATATTTGGTCAGCTGGTTGTGTTTTTGCTGAGCTTCTACTAGGCCAGCCCTTGTTTCCTGGAGAGAGTGCAGTAGACCAACTTGTTGAAATTATAAAGGTTCTTGGTACTCCAACTAGAGAAGAAATTCGATGTATGAACCCGAATTATACTGATTTCAGGTTTCCTCAGATCAAAGCTCATCCTTGGCACAAGGTGTTTCACAAACGGATGCCTCCTGAAGCTCTTGATCTTGCTTCACGACTTCTTCAATATTCACCGAGCCTTCGCTGCACTGCTTTAGCTGCAGCTTCACCAGAACTGCTGCATAGGCTGATACCAGAGCATGTCCGCCGGCAAGTTGGTCTCAGTTTCCCCCATCCTGCTGGCACGTAA 1140 0.4614 MASLPLGPQTHHHHHHLPPEHDPLKPPFRRPDHLDSDKEMSAAVIEGNDPVTGHIISTTIGGKNGEPKQTISYMAERIVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLLRLMDHPNVVTLKHCFFSTTSRDELFLNLVMEYVPETMYRVLKHYSNANQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNVLVDPLTHQVKLCDFGSAKVLVKGEANISYICSRYYRAPELIFGATEYTTSIDIWSAGCVFAELLLGQPLFPGESAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEALDLASRLLQYSPSLRCTALAAASPELLHRLIPEHVRRQVGLSFPHPAGT* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0171 379 SMART serkin_6 73 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0171 379 ProSiteProfiles Protein kinase domain profile. 73 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0171 379 FunFam Glycogen synthase kinase-3 beta 57 152 - -
Vvi12g0171 379 SUPERFAMILY Protein kinase-like (PK-like) 72 370 IPR011009 -
Vvi12g0171 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vvi12g0171 379 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 38 370 - -
Vvi12g0171 379 Gene3D Transferase(Phosphotransferase) domain 1 153 369 - -
Vvi12g0171 379 Pfam Protein kinase domain 73 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0171 379 FunFam Shaggy-related protein kinase kappa 153 376 - -
Vvi12g0171 379 ProSitePatterns Protein kinases ATP-binding region signature. 79 103 IPR017441 GO:0005524
Vvi12g0171 379 Gene3D Phosphorylase Kinase; domain 1 58 152 - -
Vvi12g0171 379 CDD STKc_GSK3 68 351 IPR039192 -
Vvi12g0171 379 MobiDBLite consensus disorder prediction 13 35 - -
Vvi12g0171 379 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0171 Vvi-Chr12 2439033 2447873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0171 79 360 Core Cell Cycle Gene Families AT3G48750 35.739 2.51e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vvi12g0171 Pkinase 1.2e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0171 K14502 - vvi:100248790 745.732