Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0170 ATGGCTTCAGAGAAGAAACTCTCAAACCCAATGAGAGACATCAAGGTCCAGAAGCTCGTCCTCAACATCTCCGTTGGAGAAAGTGGAGATCGCCTCACCAGAGCCGCTAAGGTGTTGGAACAACTCAGTGGCCAAACCCCTGTTTTCTCTAAAGCAAGATACACTGTTCGATCCTTTGGGATCAGGCGTAATGAGAAGATTGCTTGCTACGTCACTGTCAGGGGCGAGAAAGCAATGCAGCTTCTTGAGAGTGGTTTAAAGGTCAAGGAATATGAGTTGCTGAGGAGGAACTTTAGCGATACTGGCTGTTTTGGTTTTGGTATCCAGGAGCACATTGATCTTGGAATCAAATATGATCCCTCAACTGGAATTTATGGTATGGACTTCTTTGTTGTTTTGGAGCGCCCGGGTTACCGTGTTGGCCGTCGTAGAAGGTGCAAGTCTCGTGTTGGAATCCAGCACAGGGTCACAAAAGATGATTCTATGAAGTGGTTCCAGGTGAAATACGAGGGTGTGATCCTTAACAAGGCCCAGACAATAGCTGGATCTTAG 552 0.4692 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKDDSMKWFQVKYEGVILNKAQTIAGS* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0170 183 Pfam ribosomal L5P family C-terminus 66 164 IPR031309 -
Vvi12g0170 183 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 2 176 IPR002132 GO:0003735|GO:0005840|GO:0006412
Vvi12g0170 183 SUPERFAMILY RL5-like 8 173 IPR022803 -
Vvi12g0170 183 Pfam Ribosomal protein L5 9 62 IPR031310 -
Vvi12g0170 183 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 172 IPR002132 GO:0003735|GO:0005840|GO:0006412
Vvi12g0170 183 Gene3D - 2 177 IPR022803 -
Vvi12g0170 183 ProSitePatterns Ribosomal protein L5 signature. 39 55 IPR020929 GO:0003735|GO:0005840|GO:0006412
Vvi12g0170 183 FunFam 60S ribosomal protein L11 2 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0170 Vvi-Chr12 2416741 2420940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0170 1 182 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 95.604 3.42e-131 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0170 K02868 - vvi:100243655 347.051