Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0156 ATGGCCAGCATCTGTTGTCCTTTGGTCATCATCCTCATTCTGATCGGTAGTGTTGGTTTTGCCCAAAGTGATGCAAGCAAGAATGAAAGCAGTCCTGTATTCTACCTTAATTCAAGTGTCCCCTTAACATGGTACAACAACGACTCAATCAAGATCATGACTCCTGCGGATGGATCAAAAGTGAGAGTGGTCCTCTTGAGACAGCAGTCCATTAGTTTTGTGTGTGGATTCTACTGTGTTGAAGCCTGCAACTCCTACTTGTTCTCCATTGTTGCAGTTGGTGGTGGCAATTCAAGTGTGGTCTGGTCAGCAAATAGGAACTATCCGGTAAAAGAAAACGCAACACTGCAATTGACCGTAGATGGAGGGTTGGTGCTACAAGACTCGGATGGCACCCAGGTGTGGTCAACCAATGGGTCTGGTAACTCCATTCTTGGAATGAATCTTACAGAAGCAGGGAACCTGGTTCTCCTAGGCAACAAAGGAGCCTTAGCTTGGCAGTCTTTCGATCACCCTTCCGATGTGTTGCTCGTCAGGCAGTGCTTAAACGAGGGTCAAACACTGATTGCAAGCTCCTCCGGTGACATTTGGAACCAGGGACAATACTATGCCACCCTGACTTCAGATGCTGGCTTTGCTGTTTTTATTGATGCAGATCAGGCTAAACTATTGATGTATTATAAGTTGGTGCCAGACAACAGGTCAAGCAACAGTACTGGATTAAATTATGCAGAGCTTCAACAACATGGATTCCTAGTGAACCTGGGAACATCCCAAGTAACATCTGGAAGGAATTCATATGAACATTCCGCTCAATCCGACGTCAAATATATGAGACTCGATTTTGATGGGCATCTAAGAATATATCAGCACAGCGACACAACAGGATTGAGGGTGATTGTTGATTTGATCACAGAAGATCTGGGTGACTGCCAGTATCCTCTCAGATGTGGGGAATATGGTGTATGTAAGGCTGATCAATATTGTAGCTGTCCTGAAGGTGAAGACGGGGTTCAATATTTCCAAACAGATCATGGTTGCTCTAGAATTACGCCTTTGTCATGTGAACCTTCACTGCATCATCTCCTGGAAGTGAAGAATGCTACCTACTTCAACACTATTGATTCAGATGCCGCATATCCAGGAATCAAGGATATGGACATGTGCAAGCAAGCCTGTCTGCAAAATTGTTCTTGTGGTGGAGCATTTTTCAGGTATGAGAACAATGTTTCGGACGGGTATTGTTTTATGCCATCTAAAATCTTGTCCATAAGAGAAGGGCATATACCAAACTACAATTTCACATCGGCAACATTTATCAAGGTACAGATTAACTTTGTGGCACCAAGTCTTGTGCCAGCAGCAAAAACTACAAGAGAGAACTTCCCACCAACTCCGTCTTCAGGAGATGGAGCAAATATAGCAGCAATAGTAGTAGGAGCTAGTATAGTCCCTCTCATCACATTTTGCCTTGTAGTAGTTACAATCCTGGCGACACTGAGGAGGACTAGCACAGTGGAGGAAGGGGAAGACTATACTATCGATCAAGTTCCGGGAATGCCTGTGAAGTTTCTGTATGAAGACCTTCGTGTGGCAACAGAGGATTTTAAGGAGAGAGTTGGTAGTGGAGGCTTTGGGTCTGTGTTCAAAGGGTTGCTAGCAGATGGCACTAGGATTGCAGTGAAGAGGTTGGACAGAATCGAGCAGGGGATGAGAGAGTTCTTGGCAGAAGTTAAGACTATAGGAAGTCTACACCATTTTAACCTTGTAAGACTGATTGGATTCTGTGCAGAAAAATCGAACAGGCTTTTAGTTTTCGAATATATGTGCAATGGATCTTTGGATAACTGGATTTTCTATGGTTGCCAGAGACCTTGTCTAGATTGGGAAACCCGAAAGAGGATTATACTTGACATAGCCAAAGGGTTGGCTTATCTTCATGAAGAATGCAGACATAGAATAGTTCATCTAGATATCAAGCCGCAGAACATTCTCCTGGATGAAAACTTCAATGCTAAGGTCTCTGATTTTGGGCTGTCTGAACTTATAGGCAGAGATGAAAGCCAAGTTTTCACCACAATGAGAGGAACTCCTGGGTATCTTGCTCCAGAGTGGAGCCAACCAAAAGTCACTGTGAAAGTTGACATCTATAGCTTTGGAATTGTTCTTCTTGAGATAGTCACTGGAAGGAGAAATGTGGATTGCACCCGGGAAGAATCTAATTCACAAATGCTCAGGGTTCTGCAGAAGAAAGCCGAGGAAGAAAGACTAATTGAGATTGTGGAAAATTTGGAGGAAATGAAAGATCATGGAGAAGTGGTGAGGATGATAAGGATTGGAGCATGGTGTTTGCAGGATGATCCCACAAGAAGGCCTCCTATGTCTGTGGTTGTGAAGGTTTTAGAGGGAGTGATGGAGGTGGACTCAAACATCATCTACAAGTTCATCCATGCAATGACTTCAACTTCTCCATCTGATGATAAAGTTTGTACAGAACCAGAGGCATCTGTCCTATCCAATCCAAGATAA 2529 0.4369 MASICCPLVIILILIGSVGFAQSDASKNESSPVFYLNSSVPLTWYNNDSIKIMTPADGSKVRVVLLRQQSISFVCGFYCVEACNSYLFSIVAVGGGNSSVVWSANRNYPVKENATLQLTVDGGLVLQDSDGTQVWSTNGSGNSILGMNLTEAGNLVLLGNKGALAWQSFDHPSDVLLVRQCLNEGQTLIASSSGDIWNQGQYYATLTSDAGFAVFIDADQAKLLMYYKLVPDNRSSNSTGLNYAELQQHGFLVNLGTSQVTSGRNSYEHSAQSDVKYMRLDFDGHLRIYQHSDTTGLRVIVDLITEDLGDCQYPLRCGEYGVCKADQYCSCPEGEDGVQYFQTDHGCSRITPLSCEPSLHHLLEVKNATYFNTIDSDAAYPGIKDMDMCKQACLQNCSCGGAFFRYENNVSDGYCFMPSKILSIREGHIPNYNFTSATFIKVQINFVAPSLVPAAKTTRENFPPTPSSGDGANIAAIVVGASIVPLITFCLVVVTILATLRRTSTVEEGEDYTIDQVPGMPVKFLYEDLRVATEDFKERVGSGGFGSVFKGLLADGTRIAVKRLDRIEQGMREFLAEVKTIGSLHHFNLVRLIGFCAEKSNRLLVFEYMCNGSLDNWIFYGCQRPCLDWETRKRIILDIAKGLAYLHEECRHRIVHLDIKPQNILLDENFNAKVSDFGLSELIGRDESQVFTTMRGTPGYLAPEWSQPKVTVKVDIYSFGIVLLEIVTGRRNVDCTREESNSQMLRVLQKKAEEERLIEIVENLEEMKDHGEVVRMIRIGAWCLQDDPTRRPPMSVVVKVLEGVMEVDSNIIYKFIHAMTSTSPSDDKVCTEPEASVLSNPR* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0156 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 654 666 IPR008271 GO:0004672|GO:0006468
Vvi12g0156 842 CDD STKc_IRAK 540 803 - -
Vvi12g0156 842 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 61 809 - -
Vvi12g0156 842 CDD B_lectin 73 172 IPR001480 -
Vvi12g0156 842 PIRSF SRK 32 840 IPR024171 GO:0004674
Vvi12g0156 842 SUPERFAMILY alpha-D-mannose-specific plant lectins 99 215 IPR036426 -
Vvi12g0156 842 SMART blect_4 56 172 IPR001480 -
Vvi12g0156 842 ProSiteProfiles Protein kinase domain profile. 534 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0156 842 Pfam Protein kinase domain 537 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0156 842 Gene3D - 75 170 IPR036426 -
Vvi12g0156 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 73 170 - -
Vvi12g0156 842 ProSiteProfiles Bulb-type lectin domain profile. 27 170 IPR001480 -
Vvi12g0156 842 Coils Coil 747 770 - -
Vvi12g0156 842 ProSitePatterns Protein kinases ATP-binding region signature. 540 562 IPR017441 GO:0005524
Vvi12g0156 842 Gene3D Transferase(Phosphotransferase) domain 1 609 819 - -
Vvi12g0156 842 FunFam serine/threonine-protein kinase PBS1-like 502 608 - -
Vvi12g0156 842 MobiDBLite consensus disorder prediction 822 842 - -
Vvi12g0156 842 SMART serkin_6 534 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0156 842 Pfam D-mannose binding lectin 100 180 IPR001480 -
Vvi12g0156 842 FunFam S-receptor-like kinase 5 609 810 - -
Vvi12g0156 842 FunFam Os04g0303100 protein 95 223 - -
Vvi12g0156 842 Gene3D Phosphorylase Kinase; domain 1 498 608 - -
Vvi12g0156 842 SUPERFAMILY Protein kinase-like (PK-like) 516 802 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0156 Vvi-Chr12 2325209 2327737 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0156 508 808 Receptor kinase-like Gene Family AT5G20050 44.753 1.11e-83 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi12g0156 Pkinase 3.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0156 - - vvi:100245458 1676.76