Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0155 ATGGATGGATGGCAGATGAGAGTGCTCCTTGTGTATCCCAAGGATCCTCGGTTTTACTGTGGATTCTTCTGCACTGGAACCTGTGAAAGCTACTTTTTTTCAGTCGTCCGAGTTGTGGGAGGCAATGCAAGTCTGATTTGGTCAGCGAATGGGCGTCGTCCCGTGCAAAAGAATGCCGTGGTGCAACTGACTAATGGAGGTCTATCACTCAGAGATTCAAATGGCACAAAAGTCTGGTCTAGTAATACAACTGGTAACTCCATAGTGGGAATGAACCTTACTGAAGCAGGAAAGTTGGTTCTCTTTAACAATGAAGGCACCGGGCTTTGGCAGTCTACTATCCAGAACCAAACCAACACAACATCGACAAACACAACATCACAAAACGATTATTGTAGCTCTGGGGATGGGTTATGCAGTGAAGGGCTATGTAGTTGTCCTGTGGGTGTTGATGGGATTGAATATTTCAAGCAGAACCAATCTCAATTCGCAGAAGTGGGTTGCTCTAGAATTAATCCTCTGTCCTGCAACTCTCCATTGGGTCAACAGCAACTTGTGGAAGTAAGAAATTTTACCTACTTGAGCATCAATGAGACGACTGAAGCATTTCCAAATATCAAGGATATGGAAGGGTGCAAACAAACCTGCTTGCAGAATTGTTCTTGTGGTGGAGCCTTTTTCAGGTATGATTCAGATGCTTCAGATGGATATTGTTTTATGCCCTCTAGAATTTTGGTAATAAGAGAAGGGCAAACGGCGAATTACACCTTCACGTCGACATCATTCATCAAGGTACAGATCCCCTCTCTTGCACCTAGTCCTTTTCCAACAGAACCAGAGATTGTGCCACCCCCGCGTCCAAAAGGAAACAATTTTGCAGCAATAGCAGCAGGATCTGGTGCTGGGGCTTTTTTGTTAGTCTGTTTTCTAATTTTTATACTGTCAATGAAATTGCGGAAGAGTAAGGAGGAGGAGGAGGAGGGTGGGGATGCTTATACCAATCAAGTTCAAGTTCCGGGAATGCCTGTGAGATTTTCATATGAAGATCTAAGGAGAGCAACCGAGGAATTCAAGGAGAGACTTGGCCGCGGGGGATTCGGGTCTGTCTTCAAAGGAATGCTACCAGACGGCACTAAGATTGCAGTCAAGAGGCTCGACAAAATGGGGCCAGGGATGAGGGAGTTCTTAGCGGAAGTTGAGACCATTGGAAGCATACACCATTTCAATCTTGTGAGACTGATTGGATTCTGTGCAGAGAAATCTAAGAGGCTTTTGGTTTATGAATACATGAGTAATGGCTCTTTGGATAACTGGATTTTCTATGGAAGCCAGGGGCCTTGTCTTGATTGGCAAACCAGAAAGAAGATTATACTAGACATAGCCAAAGGGTTGGCTTATCTTCATGAAGATTGCCGGCAAACAATAGTACATCTGGACATAAAGCCGCAGAACATTCTCCTGGATGAAAATTTCAATGCCAAAGTTTCTGATTTCGGGTTATCTAAGCTAATAGACAAAGATGAGAGCCAAGTGCTTATCACAATGAGAGGAACTCCTGGGTATCTTGCTCCAGAATGGCGGGAATCCAGAATCACAGTAAAAGTCGATATTTATAGCTTTGGAATTGTTCTTCTTGAGATAGTAACTGGAAGGAGAAATTTTGATCGGACACGAGCAGAGTCTAGTTCACATATACTTGGGCTATTGCAAAAGAAGGGAGAGGAGGAGAGACTACTTGACATTGTGGAAATTTTGGATGAGGACATGAACAATCGTGAAGAAGTGGAGAGGATGATAAAGATTGCAGCATGGTGTTTGCAGGATGATCACACAAGAAGGCCTCCCATGTCAGTAGTTGTGAAGGTTTTGGAGGGTGTTATGGAGGTGGACTCAAACATCATCTACAAGTTTGTCCATGCAATGGGCCCTCCTGCTGTAGTCAATGATCGGGTTTCTACTGCAGTAGAAGCATCTGTTCTTTCTAATCCAAGATGA 1995 0.4396 MDGWQMRVLLVYPKDPRFYCGFFCTGTCESYFFSVVRVVGGNASLIWSANGRRPVQKNAVVQLTNGGLSLRDSNGTKVWSSNTTGNSIVGMNLTEAGKLVLFNNEGTGLWQSTIQNQTNTTSTNTTSQNDYCSSGDGLCSEGLCSCPVGVDGIEYFKQNQSQFAEVGCSRINPLSCNSPLGQQQLVEVRNFTYLSINETTEAFPNIKDMEGCKQTCLQNCSCGGAFFRYDSDASDGYCFMPSRILVIREGQTANYTFTSTSFIKVQIPSLAPSPFPTEPEIVPPPRPKGNNFAAIAAGSGAGAFLLVCFLIFILSMKLRKSKEEEEEGGDAYTNQVQVPGMPVRFSYEDLRRATEEFKERLGRGGFGSVFKGMLPDGTKIAVKRLDKMGPGMREFLAEVETIGSIHHFNLVRLIGFCAEKSKRLLVYEYMSNGSLDNWIFYGSQGPCLDWQTRKKIILDIAKGLAYLHEDCRQTIVHLDIKPQNILLDENFNAKVSDFGLSKLIDKDESQVLITMRGTPGYLAPEWRESRITVKVDIYSFGIVLLEIVTGRRNFDRTRAESSSHILGLLQKKGEEERLLDIVEILDEDMNNREEVERMIKIAAWCLQDDHTRRPPMSVVVKVLEGVMEVDSNIIYKFVHAMGPPAVVNDRVSTAVEASVLSNPR* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0155 664 SUPERFAMILY alpha-D-mannose-specific plant lectins 44 118 IPR036426 -
Vvi12g0155 664 Pfam Protein kinase domain 357 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0155 664 Gene3D Phosphorylase Kinase; domain 1 317 429 - -
Vvi12g0155 664 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 125 631 - -
Vvi12g0155 664 Gene3D - 11 116 IPR036426 -
Vvi12g0155 664 SMART serkin_6 355 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0155 664 SUPERFAMILY Protein kinase-like (PK-like) 336 624 IPR011009 -
Vvi12g0155 664 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Vvi12g0155 664 CDD STKc_IRAK 361 625 - -
Vvi12g0155 664 FunFam S-receptor-like kinase 5 430 632 - -
Vvi12g0155 664 ProSiteProfiles Protein kinase domain profile. 355 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0155 664 ProSiteProfiles Bulb-type lectin domain profile. 1 114 IPR001480 -
Vvi12g0155 664 SMART blect_4 2 116 IPR001480 -
Vvi12g0155 664 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 18 115 - -
Vvi12g0155 664 FunFam serine/threonine-protein kinase PBS1-like 320 429 - -
Vvi12g0155 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Vvi12g0155 664 Gene3D Transferase(Phosphotransferase) domain 1 430 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0155 Vvi-Chr12 2319670 2321664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0155 289 630 Receptor kinase-like Gene Family AT5G20050 42.818 1.25e-86 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi12g0155 Pkinase 7.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0155 - - vvi:100267773 1310.05