Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0154 ATGGCTGTTCCCTTCTTGTATTTGATCTTTATCACTCTTACTAGTGCTTGCTTTGGAAGTTATTCAACCATCATATTCAATGGAAGTTATTCAACTTCAATGGCGGGGAGTGGTTTCTACCTTAATTCAAGCCTTTCTCCAACAGGGTACAACAAGAATTCAATCAATATGACCGCATGTCCTGGTGATTCATCAACAGTGAGAGTAGTCCCCTCAAGGCAGAACAGTGTTAGCTTTGTTCAAACCGTCATAAGCTCTTCACACAATACTGGTGGTGCTCCATACGTCACAGCCAATGGAAGCTCTGCACACAATACTGGTGGTGTTCCAACAGCTGTCATAACCAATGGAAGTTATTCAATTTCAATGGCGGGCAGTGCTTTCTACCTTAATTCAAGCCTTTCTCCAACATGGTACAACAACAATTCAATCAATATGACTATATATCCTGGTGATTCATCAACAGTGAGAGTAGTCCTCTCGAGGCAGGACAGTATTGGTTTTGTTTGTGGTTTCTACTGTATTGGAACCTGCAGCTCTTACTTGTTCTCAGTCGTAGTAGTTGGAGATAACACTTCCAGTTTGGTTTGGTCGGCAAATAGAGACTATCCAGTTAAAGAGGATGCGATCCTGGAACTGACAGGAGAAGAAGGGCTAGTGCTACAAGATTCAGATGGCACCAAGGTGTGGTCAACAAATATATCCGGTAACTCCATACTAGGAATGAATATTACAGAAGCAGGAAATCTTGTTCTCTTTGACAGTGAAGGAGCCATGGTCTGGCAGTCATTCGACCACCCTGTTGACTCATTGCTAGTTGGGCAGCGATTATATGAAGGTCAAAAACTGATCGCAAGTTCCTCTTCCACCAATTGGAGCCTTGGACCATACTATGCTACATTAACAGCTAAGGATGGCTTTGCTGTTTTTGTCCAAGATGATCAGGCCGAAACATTGATGTATTATCAGTTGGTGCCAGACAAAAAGCTAAGCAACAGTACTGGATCAAATTATGCAGAGCTTCAACAAGATGGGTTCCTAGTGAACATGGGAGCGTCTCAAGTAACATCTGGAAGAAATCCATATGAATTTCCACTTTATTCTACCATTGAATTCATAAAACTTGAGGGTGATGGGCATCTAAGGATACATCAACTAAGTAGCGGAAAGGGGTTCCAAACGATTGTCGATTTGATTACAGTTGATCTGGGTGTGTGCCAGCATCCTCTCATCTGTGGGGAATATGGGGTATGCAGAGAAGGGCAATGTAGCTGTCCTGAAGACCATGATGGGGTTCGGTACTTCCATGAAACTCAGTCTCAATTGCCTGATCATGGTTGCTCTAGAATAACTGCATTGTCATGCGGACCTTCACTGGACCAGCATCATCTAATGGAAATAAAAAATGCAACCTACTTCAGCGTTATTGATCTAGATGCTGCATCTCCAAATATCAAGGATATGGAAGAGTGCAAACAAGCCTGTCTGCAGAATTGTTCTTGTAGTGGGGCCTTTTTCAGGTACGAGAAGAATACTTCAGATGGGTATTGTTTCATGCCATCTAAAATCTTGTCGCTGAGAGAAGAGCATATCCCCCACAACAATTTCTCATCTGCTACATTCATTAAGGTACAGATTCCCTTTGACGCACCACCAAGAAATAAAAGAAATTTAGCAGCAATAGTAGCTGGATCTAGTGCAGGTGTCATTTTCATTATTTGTCTTGCAATTTTTATATACTTGGTGATGCTGCGGAAGAGTAATTCCAAAGAGGATGGAGGTTATATCGTTCAAGTCCATGTTCCAGGAATGCTTGTGAGGCTCCCATATGAAGACATAAGGTTGGCAACAGAAGATTTCAAGGAGAGACTTGGCCAGGGGGGATTCGGTTCTGTCTTCAAAGGAATGCTAGCAGATGGCACTAGAATTGCAGTAAAGCGGCTGGACAAAATGAGCCAAGGGATGAGAGAGTTCTTAGCAGAAGTTGAGACAATAGGGAGCATACACCATTTTAATCTTGTAAGGCTGATTGGATTTTGTGCTGAAAAATCAAACAGGCTTTTAGTTTATGAATATATGAGTAATGGATCTCTGGAAAATTGGATTTTCTATGATGGCCAGAGGCCTTGTCTTGATTGGCAAACCCGAAAGAAGATAGTACTTGACATAGCCAAAGGCCTGGCTTATCTTCATGAAGAATGCCGACAGAGAATAGTTCATCTGGACATAAAGCCGCAGAACATTCTCTTGGATGAAAATTTCAATGCCAAAGTTTCCGATTTTGGGTTATCTAAGCTAATAGACAGGGATGAGAACCAAGTCCATTCAAAAATGAGAGGAACTCCTGGGTATCTGGCTCCAGAGTTGAGGGACTCAAAAATCTCTGTGAAAGCTGACATTTATAGCTTTGGTATAGTCCTCCTCGAAATAGTTAGTGGAAGGAAAAATGTTGATCGCAATCATTCAGAATCCAGTTTTCATATGCTTAGATTGTTGCAGAAGAAGGCAGAGGAGGACCGCCTGATTGAGATTGTGGAAAATCGGAATCAGGACATGCAAAATCACGAAGAAGTGGTGAGGATGATAAGGATTGGGGCTTGGTGTTTGCAGGACGATCCAACCAGGAGGCCTTCCATGTCAGTTGTTGTGAAGGTTTTGGAGGGAGTACTGGAGGTGGAACCGAGCATCACCTTCAAGTTTTTTCATGCAATAACTCCTACTTCTGTGGCCAACAACTGTGTTTCTTCTGCAGTTGAAGCATCAGTTCTTTCTAATCCAAGATGA 2784 0.4235 MAVPFLYLIFITLTSACFGSYSTIIFNGSYSTSMAGSGFYLNSSLSPTGYNKNSINMTACPGDSSTVRVVPSRQNSVSFVQTVISSSHNTGGAPYVTANGSSAHNTGGVPTAVITNGSYSISMAGSAFYLNSSLSPTWYNNNSINMTIYPGDSSTVRVVLSRQDSIGFVCGFYCIGTCSSYLFSVVVVGDNTSSLVWSANRDYPVKEDAILELTGEEGLVLQDSDGTKVWSTNISGNSILGMNITEAGNLVLFDSEGAMVWQSFDHPVDSLLVGQRLYEGQKLIASSSSTNWSLGPYYATLTAKDGFAVFVQDDQAETLMYYQLVPDKKLSNSTGSNYAELQQDGFLVNMGASQVTSGRNPYEFPLYSTIEFIKLEGDGHLRIHQLSSGKGFQTIVDLITVDLGVCQHPLICGEYGVCREGQCSCPEDHDGVRYFHETQSQLPDHGCSRITALSCGPSLDQHHLMEIKNATYFSVIDLDAASPNIKDMEECKQACLQNCSCSGAFFRYEKNTSDGYCFMPSKILSLREEHIPHNNFSSATFIKVQIPFDAPPRNKRNLAAIVAGSSAGVIFIICLAIFIYLVMLRKSNSKEDGGYIVQVHVPGMLVRLPYEDIRLATEDFKERLGQGGFGSVFKGMLADGTRIAVKRLDKMSQGMREFLAEVETIGSIHHFNLVRLIGFCAEKSNRLLVYEYMSNGSLENWIFYDGQRPCLDWQTRKKIVLDIAKGLAYLHEECRQRIVHLDIKPQNILLDENFNAKVSDFGLSKLIDRDENQVHSKMRGTPGYLAPELRDSKISVKADIYSFGIVLLEIVSGRKNVDRNHSESSFHMLRLLQKKAEEDRLIEIVENRNQDMQNHEEVVRMIRIGAWCLQDDPTRRPSMSVVVKVLEGVLEVEPSITFKFFHAITPTSVANNCVSSAVEASVLSNPR* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0154 927 SMART blect_4 139 267 IPR001480 -
Vvi12g0154 927 SUPERFAMILY Protein kinase-like (PK-like) 596 887 IPR011009 -
Vvi12g0154 927 Gene3D Transferase(Phosphotransferase) domain 1 693 899 - -
Vvi12g0154 927 Pfam Protein kinase domain 621 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0154 927 Pfam D-mannose binding lectin 195 282 IPR001480 -
Vvi12g0154 927 FunFam S-receptor-like kinase 5 693 895 - -
Vvi12g0154 927 ProSitePatterns Protein kinases ATP-binding region signature. 624 646 IPR017441 GO:0005524
Vvi12g0154 927 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 168 265 - -
Vvi12g0154 927 Gene3D Phosphorylase Kinase; domain 1 584 692 - -
Vvi12g0154 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Vvi12g0154 927 FunFam serine/threonine-protein kinase PBS1-like 585 692 - -
Vvi12g0154 927 CDD STKc_IRAK 624 888 - -
Vvi12g0154 927 CDD B_lectin 168 267 IPR001480 -
Vvi12g0154 927 ProSiteProfiles Protein kinase domain profile. 618 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0154 927 PIRSF SRK 121 925 IPR024171 GO:0004674
Vvi12g0154 927 ProSiteProfiles Bulb-type lectin domain profile. 151 265 IPR001480 -
Vvi12g0154 927 Gene3D - 184 305 - -
Vvi12g0154 927 SMART serkin_6 618 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0154 927 FunFam Os04g0303100 protein 186 318 - -
Vvi12g0154 927 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 156 894 - -
Vvi12g0154 927 SUPERFAMILY alpha-D-mannose-specific plant lectins 194 269 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0154 Vvi-Chr12 2314819 2317602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0154 567 894 Receptor kinase-like Gene Family AT5G20050 41.828 1.03e-80 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi12g0154 Pkinase 3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0154 - - vvi:100262615 1860.5